miRNA display CGI


Results 61 - 80 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29964 3' -59.6 NC_006273.1 + 116852 0.68 0.75721
Target:  5'- aCgUGGcuuugUGCAGCGUgGGUCGGCGucGCGg -3'
miRNA:   3'- -GgACCa----AUGUCGCG-CCGGCCGCu-CGU- -5'
29964 3' -59.6 NC_006273.1 + 161873 0.68 0.766223
Target:  5'- gUCUGGUcaACuGCGUGGaCGGCGAugGCAa -3'
miRNA:   3'- -GGACCAa-UGuCGCGCCgGCCGCU--CGU- -5'
29964 3' -59.6 NC_006273.1 + 167186 0.66 0.87098
Target:  5'- --cGGgcGCAGCGgccgcggaGGCCGGCGuaaacAGCGu -3'
miRNA:   3'- ggaCCaaUGUCGCg-------CCGGCCGC-----UCGU- -5'
29964 3' -59.6 NC_006273.1 + 73858 0.66 0.87098
Target:  5'- cCCgccGUUcGCgugAGCGCGGCCGacauGCGGGCGc -3'
miRNA:   3'- -GGac-CAA-UG---UCGCGCCGGC----CGCUCGU- -5'
29964 3' -59.6 NC_006273.1 + 73736 0.66 0.87098
Target:  5'- gCCaUGGgugGCGGCgGCGGCCgaGGCccGGCAg -3'
miRNA:   3'- -GG-ACCaa-UGUCG-CGCCGG--CCGc-UCGU- -5'
29964 3' -59.6 NC_006273.1 + 189313 0.66 0.863917
Target:  5'- aCCgcGGcaccUGCGGCGuCGGCgGGUGGGUg -3'
miRNA:   3'- -GGa-CCa---AUGUCGC-GCCGgCCGCUCGu -5'
29964 3' -59.6 NC_006273.1 + 193811 0.66 0.863917
Target:  5'- --aGGcUAUGGCGCGGC-GGCGAcaGCGc -3'
miRNA:   3'- ggaCCaAUGUCGCGCCGgCCGCU--CGU- -5'
29964 3' -59.6 NC_006273.1 + 64826 0.66 0.863917
Target:  5'- gCCUGGagucGCGGUuCGGCCGGacCGuGCAc -3'
miRNA:   3'- -GGACCaa--UGUCGcGCCGGCC--GCuCGU- -5'
29964 3' -59.6 NC_006273.1 + 72660 0.66 0.84162
Target:  5'- gCUUGGcgcguagUAguGCuaGGCaCGGCGAGCu -3'
miRNA:   3'- -GGACCa------AUguCGcgCCG-GCCGCUCGu -5'
29964 3' -59.6 NC_006273.1 + 195817 0.66 0.863917
Target:  5'- cCCUcGGUcgcgGCcGCGgGGCCGGaGGGCc -3'
miRNA:   3'- -GGA-CCAa---UGuCGCgCCGGCCgCUCGu -5'
29964 3' -59.6 NC_006273.1 + 66760 0.67 0.817786
Target:  5'- gCUGGUgcgcgacccggGCAGcCGCGGCuCGGCGcugacacuGGCc -3'
miRNA:   3'- gGACCAa----------UGUC-GCGCCG-GCCGC--------UCGu -5'
29964 3' -59.6 NC_006273.1 + 105067 0.67 0.804505
Target:  5'- gCCUGGUggACauggacugugagaaaAGCGCguacaugcucgaGGCCGGCGcGGCu -3'
miRNA:   3'- -GGACCAa-UG---------------UCGCG------------CCGGCCGC-UCGu -5'
29964 3' -59.6 NC_006273.1 + 167324 0.67 0.801128
Target:  5'- --cGGcgGCAGCgGCGGCCacGGCG-GCGc -3'
miRNA:   3'- ggaCCaaUGUCG-CGCCGG--CCGCuCGU- -5'
29964 3' -59.6 NC_006273.1 + 204199 0.67 0.801128
Target:  5'- gCCUGG--AC-GC-CGGCCGGCaaugGAGCAc -3'
miRNA:   3'- -GGACCaaUGuCGcGCCGGCCG----CUCGU- -5'
29964 3' -59.6 NC_006273.1 + 124421 0.67 0.801128
Target:  5'- --cGGgcgACAcguGCuGCGGCCGcGCGGGCGu -3'
miRNA:   3'- ggaCCaa-UGU---CG-CGCCGGC-CGCUCGU- -5'
29964 3' -59.6 NC_006273.1 + 210663 0.67 0.792589
Target:  5'- gCCgGGaugu-GCGCcaggaGGCCGGCGAGUAa -3'
miRNA:   3'- -GGaCCaauguCGCG-----CCGGCCGCUCGU- -5'
29964 3' -59.6 NC_006273.1 + 133124 0.67 0.78392
Target:  5'- gCUGGagcACuGCGUggGGCUGGCGGGUg -3'
miRNA:   3'- gGACCaa-UGuCGCG--CCGGCCGCUCGu -5'
29964 3' -59.6 NC_006273.1 + 113524 0.68 0.775129
Target:  5'- cCCgGGggGC-GCGCGGgCGGCGAa-- -3'
miRNA:   3'- -GGaCCaaUGuCGCGCCgGCCGCUcgu -5'
29964 3' -59.6 NC_006273.1 + 21554 0.68 0.775129
Target:  5'- --aGGacgGCGGCGCGGCgcagCGGCuGAGCc -3'
miRNA:   3'- ggaCCaa-UGUCGCGCCG----GCCG-CUCGu -5'
29964 3' -59.6 NC_006273.1 + 232968 0.66 0.87098
Target:  5'- --cGGgcaGCAgccgccGCGCGGCCucggcGGCGGGCGc -3'
miRNA:   3'- ggaCCaa-UGU------CGCGCCGG-----CCGCUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.