miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29964 5' -56 NC_006273.1 + 93176 0.66 0.948579
Target:  5'- uGCGUccaCCGCGGACGCcgcucACGCUGuc-CGa -3'
miRNA:   3'- gUGCG---GGCGCCUGUG-----UGCGACuuuGU- -5'
29964 5' -56 NC_006273.1 + 111138 0.66 0.952597
Target:  5'- uCGCGCCCGCaGACACcaagcaugccACGCgucGACc -3'
miRNA:   3'- -GUGCGGGCGcCUGUG----------UGCGacuUUGu -5'
29964 5' -56 NC_006273.1 + 119907 0.66 0.956028
Target:  5'- -cCGCCCGCGcccuucauaugccGACGCugGCU--AACGa -3'
miRNA:   3'- guGCGGGCGC-------------CUGUGugCGAcuUUGU- -5'
29964 5' -56 NC_006273.1 + 171635 0.66 0.944341
Target:  5'- gGCGCgCC-CGGcCACGCGCcagccGAAACAg -3'
miRNA:   3'- gUGCG-GGcGCCuGUGUGCGa----CUUUGU- -5'
29964 5' -56 NC_006273.1 + 44804 0.66 0.948579
Target:  5'- gGCGCCgGCGGACgugacucgGCAgcCGCUguaGAGAUAa -3'
miRNA:   3'- gUGCGGgCGCCUG--------UGU--GCGA---CUUUGU- -5'
29964 5' -56 NC_006273.1 + 179394 0.66 0.944341
Target:  5'- gACGCCCGCaaGGACuuGCAgaaGCUGGuuCGu -3'
miRNA:   3'- gUGCGGGCG--CCUG--UGUg--CGACUuuGU- -5'
29964 5' -56 NC_006273.1 + 123031 0.66 0.948579
Target:  5'- aGCGCCUccgccuCGGACACGCGCccuucGAGAUc -3'
miRNA:   3'- gUGCGGGc-----GCCUGUGUGCGa----CUUUGu -5'
29964 5' -56 NC_006273.1 + 130425 0.66 0.943905
Target:  5'- cCGCGCCCGCGucaugauGGCGCuuCGCUugcccGAGCAg -3'
miRNA:   3'- -GUGCGGGCGC-------CUGUGu-GCGAc----UUUGU- -5'
29964 5' -56 NC_006273.1 + 150220 0.66 0.948579
Target:  5'- uGCGCUCGCuGGCgguugacgcgcaACACGCUGcuAAGCGg -3'
miRNA:   3'- gUGCGGGCGcCUG------------UGUGCGAC--UUUGU- -5'
29964 5' -56 NC_006273.1 + 90481 0.66 0.944341
Target:  5'- gGCGgCUugaGCGGGCGCGCGCgcuuGAGCGu -3'
miRNA:   3'- gUGCgGG---CGCCUGUGUGCGac--UUUGU- -5'
29964 5' -56 NC_006273.1 + 57606 0.66 0.952597
Target:  5'- --aGCUCGUGGACcuCACGUUGAAc-- -3'
miRNA:   3'- gugCGGGCGCCUGu-GUGCGACUUugu -5'
29964 5' -56 NC_006273.1 + 220353 0.66 0.956398
Target:  5'- gCACGCCCcggggcguGCGGGCaaaagcuaACAUGUUGAGugcuACAu -3'
miRNA:   3'- -GUGCGGG--------CGCCUG--------UGUGCGACUU----UGU- -5'
29964 5' -56 NC_006273.1 + 191803 0.66 0.948579
Target:  5'- aCACGCgCCGCGG-CACuugccuacgGCGCUGcucCAg -3'
miRNA:   3'- -GUGCG-GGCGCCuGUG---------UGCGACuuuGU- -5'
29964 5' -56 NC_006273.1 + 143530 0.66 0.956398
Target:  5'- gGCGCCgCGCuGGugucGCACACGCUacgcuuugugGAGGCc -3'
miRNA:   3'- gUGCGG-GCG-CC----UGUGUGCGA----------CUUUGu -5'
29964 5' -56 NC_006273.1 + 119165 0.66 0.952597
Target:  5'- gAUGUCgCGCGGACAgcCGCUGAGc-- -3'
miRNA:   3'- gUGCGG-GCGCCUGUguGCGACUUugu -5'
29964 5' -56 NC_006273.1 + 30451 0.66 0.952597
Target:  5'- aCACGCCgGCGGAUgaggAgGCGgaGGAcaGCGu -3'
miRNA:   3'- -GUGCGGgCGCCUG----UgUGCgaCUU--UGU- -5'
29964 5' -56 NC_006273.1 + 142448 0.66 0.963366
Target:  5'- gCGCGUgCGCGuGugcGCACACGCgUGAcguAACAa -3'
miRNA:   3'- -GUGCGgGCGC-C---UGUGUGCG-ACU---UUGU- -5'
29964 5' -56 NC_006273.1 + 64726 0.66 0.952597
Target:  5'- gGCGCgCGUcuGGACGCGCgGCUaGAGCGc -3'
miRNA:   3'- gUGCGgGCG--CCUGUGUG-CGAcUUUGU- -5'
29964 5' -56 NC_006273.1 + 132549 0.66 0.948579
Target:  5'- -gUGCCCGUGGACGCG-GCcGgcGCGc -3'
miRNA:   3'- guGCGGGCGCCUGUGUgCGaCuuUGU- -5'
29964 5' -56 NC_006273.1 + 230217 0.66 0.956398
Target:  5'- gCAUGaCCCGUugGGAUugACGCgguuuaucaUGAGGCAa -3'
miRNA:   3'- -GUGC-GGGCG--CCUGugUGCG---------ACUUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.