miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29964 5' -56 NC_006273.1 + 19445 1.08 0.005139
Target:  5'- gCACGCCCGCGGACACACGCUGAAACAg -3'
miRNA:   3'- -GUGCGGGCGCCUGUGUGCGACUUUGU- -5'
29964 5' -56 NC_006273.1 + 105113 0.83 0.208221
Target:  5'- gGCGCuuGCGGACGCACGUUGAGucCAa -3'
miRNA:   3'- gUGCGggCGCCUGUGUGCGACUUu-GU- -5'
29964 5' -56 NC_006273.1 + 103924 0.82 0.245831
Target:  5'- gUACGCCacgaaaGCGGACACGCGCUGAcggaagGGCGa -3'
miRNA:   3'- -GUGCGGg-----CGCCUGUGUGCGACU------UUGU- -5'
29964 5' -56 NC_006273.1 + 64245 0.82 0.251643
Target:  5'- cCugGCCCGCGGGCACggGCGUUGcgGCGg -3'
miRNA:   3'- -GugCGGGCGCCUGUG--UGCGACuuUGU- -5'
29964 5' -56 NC_006273.1 + 26931 0.81 0.276023
Target:  5'- uCACGCCCGUGGugugucgGCACGCUGGGACc -3'
miRNA:   3'- -GUGCGGGCGCCug-----UGUGCGACUUUGu -5'
29964 5' -56 NC_006273.1 + 106536 0.78 0.384065
Target:  5'- cCACGCUgGCGcGACAgGCGCUGAAccGCAu -3'
miRNA:   3'- -GUGCGGgCGC-CUGUgUGCGACUU--UGU- -5'
29964 5' -56 NC_006273.1 + 40406 0.75 0.535836
Target:  5'- aCACGCCCGCGacacacccgcGGCACACcCUGAcACAc -3'
miRNA:   3'- -GUGCGGGCGC----------CUGUGUGcGACUuUGU- -5'
29964 5' -56 NC_006273.1 + 468 0.75 0.535836
Target:  5'- aCACGCCCGCGacacacccgcGGCACACcCUGAcACAc -3'
miRNA:   3'- -GUGCGGGCGC----------CUGUGUGcGACUuUGU- -5'
29964 5' -56 NC_006273.1 + 235299 0.75 0.535836
Target:  5'- aCACGCCCGCGacacacccgcGGCACACcCUGAcACAc -3'
miRNA:   3'- -GUGCGGGCGC----------CUGUGUGcGACUuUGU- -5'
29964 5' -56 NC_006273.1 + 57040 0.74 0.614391
Target:  5'- gGCGUCCGCGGcccGCGaGCGCaUGAAACAu -3'
miRNA:   3'- gUGCGGGCGCC---UGUgUGCG-ACUUUGU- -5'
29964 5' -56 NC_006273.1 + 37636 0.73 0.654172
Target:  5'- aCGCGaCCCGCGcGGCaaaagGCACGCUGuuGACGg -3'
miRNA:   3'- -GUGC-GGGCGC-CUG-----UGUGCGACu-UUGU- -5'
29964 5' -56 NC_006273.1 + 99357 0.73 0.654172
Target:  5'- aCGCgGCCCGCGGAUcgGCcaGCGCUGucuACAu -3'
miRNA:   3'- -GUG-CGGGCGCCUG--UG--UGCGACuu-UGU- -5'
29964 5' -56 NC_006273.1 + 103847 0.72 0.70346
Target:  5'- gCACGUUCGCGGA-ACGCGUUGAucuGCGu -3'
miRNA:   3'- -GUGCGGGCGCCUgUGUGCGACUu--UGU- -5'
29964 5' -56 NC_006273.1 + 1272 0.72 0.722835
Target:  5'- aGCGCgaCGCGGGCACGCuGCUGccGCu -3'
miRNA:   3'- gUGCGg-GCGCCUGUGUG-CGACuuUGu -5'
29964 5' -56 NC_006273.1 + 87381 0.72 0.722835
Target:  5'- gCGCGCCaacaCGCGGAUuaACGCGCUGccuucuAGCAa -3'
miRNA:   3'- -GUGCGG----GCGCCUG--UGUGCGACu-----UUGU- -5'
29964 5' -56 NC_006273.1 + 49336 0.72 0.722835
Target:  5'- -cCGCCCgcGCGGACG-ACGCUGAAAg- -3'
miRNA:   3'- guGCGGG--CGCCUGUgUGCGACUUUgu -5'
29964 5' -56 NC_006273.1 + 187361 0.72 0.722835
Target:  5'- cCAUGUCCgGCGGAgGCACGCUGu---- -3'
miRNA:   3'- -GUGCGGG-CGCCUgUGUGCGACuuugu -5'
29964 5' -56 NC_006273.1 + 196165 0.72 0.722835
Target:  5'- aGCGCgaCGCGGGCACGCuGCUGccGCu -3'
miRNA:   3'- gUGCGg-GCGCCUGUGUG-CGACuuUGu -5'
29964 5' -56 NC_006273.1 + 214955 0.72 0.732416
Target:  5'- uCACG-CCGCGGACACGuCGauuagGAGACGa -3'
miRNA:   3'- -GUGCgGGCGCCUGUGU-GCga---CUUUGU- -5'
29964 5' -56 NC_006273.1 + 78687 0.71 0.741915
Target:  5'- gGgGUCCGCGGGCAC-CGCcgccgGAGGCGc -3'
miRNA:   3'- gUgCGGGCGCCUGUGuGCGa----CUUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.