miRNA display CGI


Results 21 - 40 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29964 5' -56 NC_006273.1 + 44804 0.66 0.948579
Target:  5'- gGCGCCgGCGGACgugacucgGCAgcCGCUguaGAGAUAa -3'
miRNA:   3'- gUGCGGgCGCCUG--------UGU--GCGA---CUUUGU- -5'
29964 5' -56 NC_006273.1 + 132549 0.66 0.948579
Target:  5'- -gUGCCCGUGGACGCG-GCcGgcGCGc -3'
miRNA:   3'- guGCGGGCGCCUGUGUgCGaCuuUGU- -5'
29964 5' -56 NC_006273.1 + 123031 0.66 0.948579
Target:  5'- aGCGCCUccgccuCGGACACGCGCccuucGAGAUc -3'
miRNA:   3'- gUGCGGGc-----GCCUGUGUGCGa----CUUUGu -5'
29964 5' -56 NC_006273.1 + 191803 0.66 0.948579
Target:  5'- aCACGCgCCGCGG-CACuugccuacgGCGCUGcucCAg -3'
miRNA:   3'- -GUGCG-GGCGCCuGUG---------UGCGACuuuGU- -5'
29964 5' -56 NC_006273.1 + 94342 0.66 0.948579
Target:  5'- -cCGUCCGCGGGCccgucccacCGCcCUGGAGCAc -3'
miRNA:   3'- guGCGGGCGCCUGu--------GUGcGACUUUGU- -5'
29964 5' -56 NC_006273.1 + 150220 0.66 0.948579
Target:  5'- uGCGCUCGCuGGCgguugacgcgcaACACGCUGcuAAGCGg -3'
miRNA:   3'- gUGCGGGCGcCUG------------UGUGCGAC--UUUGU- -5'
29964 5' -56 NC_006273.1 + 90481 0.66 0.944341
Target:  5'- gGCGgCUugaGCGGGCGCGCGCgcuuGAGCGu -3'
miRNA:   3'- gUGCgGG---CGCCUGUGUGCGac--UUUGU- -5'
29964 5' -56 NC_006273.1 + 179394 0.66 0.944341
Target:  5'- gACGCCCGCaaGGACuuGCAgaaGCUGGuuCGu -3'
miRNA:   3'- gUGCGGGCG--CCUG--UGUg--CGACUuuGU- -5'
29964 5' -56 NC_006273.1 + 171635 0.66 0.944341
Target:  5'- gGCGCgCC-CGGcCACGCGCcagccGAAACAg -3'
miRNA:   3'- gUGCG-GGcGCCuGUGUGCGa----CUUUGU- -5'
29964 5' -56 NC_006273.1 + 130425 0.66 0.943905
Target:  5'- cCGCGCCCGCGucaugauGGCGCuuCGCUugcccGAGCAg -3'
miRNA:   3'- -GUGCGGGCGC-------CUGUGu-GCGAc----UUUGU- -5'
29964 5' -56 NC_006273.1 + 40230 0.67 0.939881
Target:  5'- gCACaaCCCGCgucgaGGACACACGCaGAcACGg -3'
miRNA:   3'- -GUGc-GGGCG-----CCUGUGUGCGaCUuUGU- -5'
29964 5' -56 NC_006273.1 + 25959 0.67 0.939881
Target:  5'- gUACGCUa-CGaGACGC-CGCUGGAACGc -3'
miRNA:   3'- -GUGCGGgcGC-CUGUGuGCGACUUUGU- -5'
29964 5' -56 NC_006273.1 + 83420 0.67 0.939881
Target:  5'- gGCGCCCGagcgGGACAUcCGCgaccuguuuaaGAAGCAg -3'
miRNA:   3'- gUGCGGGCg---CCUGUGuGCGa----------CUUUGU- -5'
29964 5' -56 NC_006273.1 + 235123 0.67 0.939881
Target:  5'- gCACaaCCCGCgucgaGGACACACGCaGAcACGg -3'
miRNA:   3'- -GUGc-GGGCG-----CCUGUGUGCGaCUuUGU- -5'
29964 5' -56 NC_006273.1 + 292 0.67 0.939881
Target:  5'- gCACaaCCCGCgucgaGGACACACGCaGAcACGg -3'
miRNA:   3'- -GUGc-GGGCG-----CCUGUGUGCGaCUuUGU- -5'
29964 5' -56 NC_006273.1 + 205348 0.67 0.939881
Target:  5'- -uUGCCCGUGGuCugGCcgccggGCUGGAACc -3'
miRNA:   3'- guGCGGGCGCCuGugUG------CGACUUUGu -5'
29964 5' -56 NC_006273.1 + 173780 0.67 0.939881
Target:  5'- uGCGCCuCGCcaucauGGACGCGCGCgcgGugGCc -3'
miRNA:   3'- gUGCGG-GCG------CCUGUGUGCGa--CuuUGu -5'
29964 5' -56 NC_006273.1 + 112616 0.67 0.939422
Target:  5'- gGCGCCaCGUucccacgGGACGCGCucCUGGGACGc -3'
miRNA:   3'- gUGCGG-GCG-------CCUGUGUGc-GACUUUGU- -5'
29964 5' -56 NC_006273.1 + 38818 0.67 0.935197
Target:  5'- aACGUCUGuCGGA-GCGCcgGCUGAGGCAg -3'
miRNA:   3'- gUGCGGGC-GCCUgUGUG--CGACUUUGU- -5'
29964 5' -56 NC_006273.1 + 104104 0.67 0.935197
Target:  5'- uCAUGUucuugggaagCCGCGGcgcGCGCACGCcGAGACc -3'
miRNA:   3'- -GUGCG----------GGCGCC---UGUGUGCGaCUUUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.