miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29964 5' -56 NC_006273.1 + 292 0.67 0.939881
Target:  5'- gCACaaCCCGCgucgaGGACACACGCaGAcACGg -3'
miRNA:   3'- -GUGc-GGGCG-----CCUGUGUGCGaCUuUGU- -5'
29964 5' -56 NC_006273.1 + 378 0.68 0.896108
Target:  5'- aCACGCCCGCG-ACACAC-CcGGccAACAc -3'
miRNA:   3'- -GUGCGGGCGCcUGUGUGcGaCU--UUGU- -5'
29964 5' -56 NC_006273.1 + 423 0.68 0.896108
Target:  5'- aCACGCCCGCG-ACACAC-CcGGccAACAc -3'
miRNA:   3'- -GUGCGGGCGCcUGUGUGcGaCU--UUGU- -5'
29964 5' -56 NC_006273.1 + 468 0.75 0.535836
Target:  5'- aCACGCCCGCGacacacccgcGGCACACcCUGAcACAc -3'
miRNA:   3'- -GUGCGGGCGC----------CUGUGUGcGACUuUGU- -5'
29964 5' -56 NC_006273.1 + 1272 0.72 0.722835
Target:  5'- aGCGCgaCGCGGGCACGCuGCUGccGCu -3'
miRNA:   3'- gUGCGg-GCGCCUGUGUG-CGACuuUGu -5'
29964 5' -56 NC_006273.1 + 1516 0.68 0.889637
Target:  5'- gACG-CCGCGGAC-UACGCUGcuuGCGc -3'
miRNA:   3'- gUGCgGGCGCCUGuGUGCGACuu-UGU- -5'
29964 5' -56 NC_006273.1 + 2362 0.69 0.868232
Target:  5'- -cUGCgCGCGGgcgugcugggcgcGCugGCGCUGggGCGc -3'
miRNA:   3'- guGCGgGCGCC-------------UGugUGCGACuuUGU- -5'
29964 5' -56 NC_006273.1 + 16884 0.68 0.896108
Target:  5'- aCACgGUCUGCGG-CGCGCggccagGCUGGAACGc -3'
miRNA:   3'- -GUG-CGGGCGCCuGUGUG------CGACUUUGU- -5'
29964 5' -56 NC_006273.1 + 18984 0.66 0.959637
Target:  5'- aGCGCCUGgggccgcaCGGACcuacugcccacggGCGCGCUGcaAGACAa -3'
miRNA:   3'- gUGCGGGC--------GCCUG-------------UGUGCGAC--UUUGU- -5'
29964 5' -56 NC_006273.1 + 19445 1.08 0.005139
Target:  5'- gCACGCCCGCGGACACACGCUGAAACAg -3'
miRNA:   3'- -GUGCGGGCGCCUGUGUGCGACUUUGU- -5'
29964 5' -56 NC_006273.1 + 21527 0.7 0.822321
Target:  5'- aCAuCGCCgGCGGGCGCugGCguuucGAGgACGg -3'
miRNA:   3'- -GU-GCGGgCGCCUGUGugCGa----CUU-UGU- -5'
29964 5' -56 NC_006273.1 + 25959 0.67 0.939881
Target:  5'- gUACGCUa-CGaGACGC-CGCUGGAACGc -3'
miRNA:   3'- -GUGCGGgcGC-CUGUGuGCGACUUUGU- -5'
29964 5' -56 NC_006273.1 + 26931 0.81 0.276023
Target:  5'- uCACGCCCGUGGugugucgGCACGCUGGGACc -3'
miRNA:   3'- -GUGCGGGCGCCug-----UGUGCGACUUUGu -5'
29964 5' -56 NC_006273.1 + 30451 0.66 0.952597
Target:  5'- aCACGCCgGCGGAUgaggAgGCGgaGGAcaGCGu -3'
miRNA:   3'- -GUGCGGgCGCCUG----UgUGCgaCUU--UGU- -5'
29964 5' -56 NC_006273.1 + 37636 0.73 0.654172
Target:  5'- aCGCGaCCCGCGcGGCaaaagGCACGCUGuuGACGg -3'
miRNA:   3'- -GUGC-GGGCGC-CUG-----UGUGCGACu-UUGU- -5'
29964 5' -56 NC_006273.1 + 38818 0.67 0.935197
Target:  5'- aACGUCUGuCGGA-GCGCcgGCUGAGGCAg -3'
miRNA:   3'- gUGCGGGC-GCCUgUGUG--CGACUUUGU- -5'
29964 5' -56 NC_006273.1 + 39121 0.69 0.868954
Target:  5'- aCGCGuCCCGCGGcgACA-GCUGAcGCAg -3'
miRNA:   3'- -GUGC-GGGCGCCugUGUgCGACUuUGU- -5'
29964 5' -56 NC_006273.1 + 40230 0.67 0.939881
Target:  5'- gCACaaCCCGCgucgaGGACACACGCaGAcACGg -3'
miRNA:   3'- -GUGc-GGGCG-----CCUGUGUGCGaCUuUGU- -5'
29964 5' -56 NC_006273.1 + 40316 0.68 0.896108
Target:  5'- aCACGCCCGCG-ACACAC-CcGGccAACAc -3'
miRNA:   3'- -GUGCGGGCGCcUGUGUGcGaCU--UUGU- -5'
29964 5' -56 NC_006273.1 + 40361 0.68 0.896108
Target:  5'- aCACGCCCGCG-ACACAC-CcGGccAACAc -3'
miRNA:   3'- -GUGCGGGCGCcUGUGUGcGaCU--UUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.