miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29964 5' -56 NC_006273.1 + 112949 0.69 0.861651
Target:  5'- -uCGCCUaCGGACACGCGCUuuGGGAgGg -3'
miRNA:   3'- guGCGGGcGCCUGUGUGCGA--CUUUgU- -5'
29964 5' -56 NC_006273.1 + 21527 0.7 0.822321
Target:  5'- aCAuCGCCgGCGGGCGCugGCguuucGAGgACGg -3'
miRNA:   3'- -GU-GCGGgCGCCUGUGugCGa----CUU-UGU- -5'
29964 5' -56 NC_006273.1 + 115947 0.7 0.837794
Target:  5'- -cCGCCgcucaagCGCGGgugacauagGCGCugGCUGAGACGg -3'
miRNA:   3'- guGCGG-------GCGCC---------UGUGugCGACUUUGU- -5'
29964 5' -56 NC_006273.1 + 123100 0.7 0.838591
Target:  5'- gGCGCCUcgguGCGGucGCAgguCACGUUGAAACGu -3'
miRNA:   3'- gUGCGGG----CGCC--UGU---GUGCGACUUUGU- -5'
29964 5' -56 NC_006273.1 + 152790 0.69 0.846464
Target:  5'- gCACGCCCGUuuGCACGCuCUGgcGCAa -3'
miRNA:   3'- -GUGCGGGCGccUGUGUGcGACuuUGU- -5'
29964 5' -56 NC_006273.1 + 176688 0.69 0.846464
Target:  5'- gCGCGCacCCGCGG-CACGCgGCUGuGACc -3'
miRNA:   3'- -GUGCG--GGCGCCuGUGUG-CGACuUUGu -5'
29964 5' -56 NC_006273.1 + 75582 0.69 0.854152
Target:  5'- uGCGCgCCGCuggccaucGACACGCGCUGuAACc -3'
miRNA:   3'- gUGCG-GGCGc-------CUGUGUGCGACuUUGu -5'
29964 5' -56 NC_006273.1 + 121922 0.69 0.854152
Target:  5'- --gGCCCGUGGGguugUGCACGUUGAccGACAc -3'
miRNA:   3'- gugCGGGCGCCU----GUGUGCGACU--UUGU- -5'
29964 5' -56 NC_006273.1 + 143412 0.69 0.854152
Target:  5'- gCACGCCgGCGcGGCcugccGCGCGUUGGAgaACGg -3'
miRNA:   3'- -GUGCGGgCGC-CUG-----UGUGCGACUU--UGU- -5'
29964 5' -56 NC_006273.1 + 113628 0.71 0.78788
Target:  5'- gCGCGacCCCGCGGu--CACGCUGucGCAg -3'
miRNA:   3'- -GUGC--GGGCGCCuguGUGCGACuuUGU- -5'
29964 5' -56 NC_006273.1 + 102847 0.71 0.760632
Target:  5'- cCGCGUCCaCGGGCACGCuGUUGGGugGg -3'
miRNA:   3'- -GUGCGGGcGCCUGUGUG-CGACUUugU- -5'
29964 5' -56 NC_006273.1 + 214955 0.72 0.732416
Target:  5'- uCACG-CCGCGGACACGuCGauuagGAGACGa -3'
miRNA:   3'- -GUGCgGGCGCCUGUGU-GCga---CUUUGU- -5'
29964 5' -56 NC_006273.1 + 64245 0.82 0.251643
Target:  5'- cCugGCCCGCGGGCACggGCGUUGcgGCGg -3'
miRNA:   3'- -GugCGGGCGCCUGUG--UGCGACuuUGU- -5'
29964 5' -56 NC_006273.1 + 468 0.75 0.535836
Target:  5'- aCACGCCCGCGacacacccgcGGCACACcCUGAcACAc -3'
miRNA:   3'- -GUGCGGGCGC----------CUGUGUGcGACUuUGU- -5'
29964 5' -56 NC_006273.1 + 235299 0.75 0.535836
Target:  5'- aCACGCCCGCGacacacccgcGGCACACcCUGAcACAc -3'
miRNA:   3'- -GUGCGGGCGC----------CUGUGUGcGACUuUGU- -5'
29964 5' -56 NC_006273.1 + 37636 0.73 0.654172
Target:  5'- aCGCGaCCCGCGcGGCaaaagGCACGCUGuuGACGg -3'
miRNA:   3'- -GUGC-GGGCGC-CUG-----UGUGCGACu-UUGU- -5'
29964 5' -56 NC_006273.1 + 103847 0.72 0.70346
Target:  5'- gCACGUUCGCGGA-ACGCGUUGAucuGCGu -3'
miRNA:   3'- -GUGCGGGCGCCUgUGUGCGACUu--UGU- -5'
29964 5' -56 NC_006273.1 + 196165 0.72 0.722835
Target:  5'- aGCGCgaCGCGGGCACGCuGCUGccGCu -3'
miRNA:   3'- gUGCGg-GCGCCUGUGUG-CGACuuUGu -5'
29964 5' -56 NC_006273.1 + 187361 0.72 0.722835
Target:  5'- cCAUGUCCgGCGGAgGCACGCUGu---- -3'
miRNA:   3'- -GUGCGGG-CGCCUgUGUGCGACuuugu -5'
29964 5' -56 NC_006273.1 + 49336 0.72 0.722835
Target:  5'- -cCGCCCgcGCGGACG-ACGCUGAAAg- -3'
miRNA:   3'- guGCGGG--CGCCUGUgUGCGACUUUgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.