miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29965 5' -52.6 NC_006273.1 + 234697 0.66 0.996628
Target:  5'- cCCUcagCCCUgUC-CAGUGUCGGAcugGCGg -3'
miRNA:   3'- -GGAag-GGGAgAGuGUCGCAGCUU---UGC- -5'
29965 5' -52.6 NC_006273.1 + 194759 0.66 0.996628
Target:  5'- cCCUcagCCCUgUC-CAGUGUCGGAcugGCGg -3'
miRNA:   3'- -GGAag-GGGAgAGuGUCGCAGCUU---UGC- -5'
29965 5' -52.6 NC_006273.1 + 101976 0.66 0.996069
Target:  5'- uCgUUCUCCUCgacgCGCGGCGgCGGAGg- -3'
miRNA:   3'- -GgAAGGGGAGa---GUGUCGCaGCUUUgc -5'
29965 5' -52.6 NC_006273.1 + 114954 0.66 0.995437
Target:  5'- ---aCCCUUCUCACcauGCGUCuuGGCa -3'
miRNA:   3'- ggaaGGGGAGAGUGu--CGCAGcuUUGc -5'
29965 5' -52.6 NC_006273.1 + 122974 0.66 0.993923
Target:  5'- aCCUccagUCCCUCgucCGCcGCGcCGGAGCGu -3'
miRNA:   3'- -GGAa---GGGGAGa--GUGuCGCaGCUUUGC- -5'
29965 5' -52.6 NC_006273.1 + 142197 0.66 0.993923
Target:  5'- ---aCCCCUCggACAGCGU--GAGCGg -3'
miRNA:   3'- ggaaGGGGAGagUGUCGCAgcUUUGC- -5'
29965 5' -52.6 NC_006273.1 + 98529 0.67 0.993028
Target:  5'- cUCUUCCCCcCUC-CGGgagaggggaCGUCGggGCc -3'
miRNA:   3'- -GGAAGGGGaGAGuGUC---------GCAGCuuUGc -5'
29965 5' -52.6 NC_006273.1 + 185868 0.67 0.992031
Target:  5'- ---aCCUCgUCUUGCcacGCGUCGAAGCGg -3'
miRNA:   3'- ggaaGGGG-AGAGUGu--CGCAGCUUUGC- -5'
29965 5' -52.6 NC_006273.1 + 94660 0.67 0.990923
Target:  5'- cCCUUCCCCUCccccCACGGgGggcUGGGucGCGg -3'
miRNA:   3'- -GGAAGGGGAGa---GUGUCgCa--GCUU--UGC- -5'
29965 5' -52.6 NC_006273.1 + 195811 0.67 0.990923
Target:  5'- cCCcgCCCCUCggUCGCGGcCG-CGggGCc -3'
miRNA:   3'- -GGaaGGGGAG--AGUGUC-GCaGCuuUGc -5'
29965 5' -52.6 NC_006273.1 + 919 0.67 0.990923
Target:  5'- cCCcgCCCCUCggUCGCGGcCG-CGggGCc -3'
miRNA:   3'- -GGaaGGGGAG--AGUGUC-GCaGCuuUGc -5'
29965 5' -52.6 NC_006273.1 + 163763 0.67 0.989698
Target:  5'- gUCUUCCuCCUCUCGgAGa-UCGcGACGg -3'
miRNA:   3'- -GGAAGG-GGAGAGUgUCgcAGCuUUGC- -5'
29965 5' -52.6 NC_006273.1 + 120539 0.67 0.989698
Target:  5'- aCCUcggUgCUUUUugGGCGUCGAGGCGa -3'
miRNA:   3'- -GGAag-GgGAGAGugUCGCAGCUUUGC- -5'
29965 5' -52.6 NC_006273.1 + 233686 0.68 0.986706
Target:  5'- gCCgucgCCuCCUCggcgCGCAGCaacgucuGUCGGAGCGc -3'
miRNA:   3'- -GGaa--GG-GGAGa---GUGUCG-------CAGCUUUGC- -5'
29965 5' -52.6 NC_006273.1 + 38794 0.68 0.986706
Target:  5'- gCCgucgCCuCCUCggcgCGCAGCaacgucuGUCGGAGCGc -3'
miRNA:   3'- -GGaa--GG-GGAGa---GUGUCG-------CAGCUUUGC- -5'
29965 5' -52.6 NC_006273.1 + 63165 0.68 0.983462
Target:  5'- aCCUUgcgUCCgUCUCGCGGCG-CGGccGGCGc -3'
miRNA:   3'- -GGAA---GGGgAGAGUGUCGCaGCU--UUGC- -5'
29965 5' -52.6 NC_006273.1 + 187934 0.68 0.981124
Target:  5'- uCCUcgUCCCCgaacucgccgcgCUCGCgGGCGUcCGAGACc -3'
miRNA:   3'- -GGA--AGGGGa-----------GAGUG-UCGCA-GCUUUGc -5'
29965 5' -52.6 NC_006273.1 + 154293 0.69 0.963017
Target:  5'- gCUUUUUCUCUCGCA-CGUCGAggUGc -3'
miRNA:   3'- gGAAGGGGAGAGUGUcGCAGCUuuGC- -5'
29965 5' -52.6 NC_006273.1 + 40895 0.7 0.955935
Target:  5'- gCCUUCCCUgaaC-CGGCGUCGAcGCa -3'
miRNA:   3'- -GGAAGGGGagaGuGUCGCAGCUuUGc -5'
29965 5' -52.6 NC_006273.1 + 203082 0.7 0.955935
Target:  5'- -aUUCCCCgcugUCGCGGCgGUCGcGACGg -3'
miRNA:   3'- ggAAGGGGag--AGUGUCG-CAGCuUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.