Results 1 - 20 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29965 | 5' | -52.6 | NC_006273.1 | + | 919 | 0.67 | 0.990923 |
Target: 5'- cCCcgCCCCUCggUCGCGGcCG-CGggGCc -3' miRNA: 3'- -GGaaGGGGAG--AGUGUC-GCaGCuuUGc -5' |
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29965 | 5' | -52.6 | NC_006273.1 | + | 19044 | 1.1 | 0.009271 |
Target: 5'- gCCUUCCCCUCUCACAGCGUCGAAACGc -3' miRNA: 3'- -GGAAGGGGAGAGUGUCGCAGCUUUGC- -5' |
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29965 | 5' | -52.6 | NC_006273.1 | + | 30583 | 0.7 | 0.95207 |
Target: 5'- gUUUCCCCUgacacguaauaCUCGCGucaCGUCGGGACGa -3' miRNA: 3'- gGAAGGGGA-----------GAGUGUc--GCAGCUUUGC- -5' |
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29965 | 5' | -52.6 | NC_006273.1 | + | 38794 | 0.68 | 0.986706 |
Target: 5'- gCCgucgCCuCCUCggcgCGCAGCaacgucuGUCGGAGCGc -3' miRNA: 3'- -GGaa--GG-GGAGa---GUGUCG-------CAGCUUUGC- -5' |
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29965 | 5' | -52.6 | NC_006273.1 | + | 40895 | 0.7 | 0.955935 |
Target: 5'- gCCUUCCCUgaaC-CGGCGUCGAcGCa -3' miRNA: 3'- -GGAAGGGGagaGuGUCGCAGCUuUGc -5' |
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29965 | 5' | -52.6 | NC_006273.1 | + | 63165 | 0.68 | 0.983462 |
Target: 5'- aCCUUgcgUCCgUCUCGCGGCG-CGGccGGCGc -3' miRNA: 3'- -GGAA---GGGgAGAGUGUCGCaGCU--UUGC- -5' |
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29965 | 5' | -52.6 | NC_006273.1 | + | 71382 | 0.7 | 0.943674 |
Target: 5'- uUUUCCCCaugggCUguCAGCGUCGGGugcGCGa -3' miRNA: 3'- gGAAGGGGa----GAguGUCGCAGCUU---UGC- -5' |
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29965 | 5' | -52.6 | NC_006273.1 | + | 94660 | 0.67 | 0.990923 |
Target: 5'- cCCUUCCCCUCccccCACGGgGggcUGGGucGCGg -3' miRNA: 3'- -GGAAGGGGAGa---GUGUCgCa--GCUU--UGC- -5' |
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29965 | 5' | -52.6 | NC_006273.1 | + | 98529 | 0.67 | 0.993028 |
Target: 5'- cUCUUCCCCcCUC-CGGgagaggggaCGUCGggGCc -3' miRNA: 3'- -GGAAGGGGaGAGuGUC---------GCAGCuuUGc -5' |
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29965 | 5' | -52.6 | NC_006273.1 | + | 101976 | 0.66 | 0.996069 |
Target: 5'- uCgUUCUCCUCgacgCGCGGCGgCGGAGg- -3' miRNA: 3'- -GgAAGGGGAGa---GUGUCGCaGCUUUgc -5' |
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29965 | 5' | -52.6 | NC_006273.1 | + | 114954 | 0.66 | 0.995437 |
Target: 5'- ---aCCCUUCUCACcauGCGUCuuGGCa -3' miRNA: 3'- ggaaGGGGAGAGUGu--CGCAGcuUUGc -5' |
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29965 | 5' | -52.6 | NC_006273.1 | + | 119233 | 0.71 | 0.918696 |
Target: 5'- uCC-UCCUCUUUCACcGCGgucUCGAAACGc -3' miRNA: 3'- -GGaAGGGGAGAGUGuCGC---AGCUUUGC- -5' |
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29965 | 5' | -52.6 | NC_006273.1 | + | 120539 | 0.67 | 0.989698 |
Target: 5'- aCCUcggUgCUUUUugGGCGUCGAGGCGa -3' miRNA: 3'- -GGAag-GgGAGAGugUCGCAGCUUUGC- -5' |
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29965 | 5' | -52.6 | NC_006273.1 | + | 122974 | 0.66 | 0.993923 |
Target: 5'- aCCUccagUCCCUCgucCGCcGCGcCGGAGCGu -3' miRNA: 3'- -GGAa---GGGGAGa--GUGuCGCaGCUUUGC- -5' |
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29965 | 5' | -52.6 | NC_006273.1 | + | 142197 | 0.66 | 0.993923 |
Target: 5'- ---aCCCCUCggACAGCGU--GAGCGg -3' miRNA: 3'- ggaaGGGGAGagUGUCGCAgcUUUGC- -5' |
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29965 | 5' | -52.6 | NC_006273.1 | + | 154293 | 0.69 | 0.963017 |
Target: 5'- gCUUUUUCUCUCGCA-CGUCGAggUGc -3' miRNA: 3'- gGAAGGGGAGAGUGUcGCAGCUuuGC- -5' |
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29965 | 5' | -52.6 | NC_006273.1 | + | 163763 | 0.67 | 0.989698 |
Target: 5'- gUCUUCCuCCUCUCGgAGa-UCGcGACGg -3' miRNA: 3'- -GGAAGG-GGAGAGUgUCgcAGCuUUGC- -5' |
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29965 | 5' | -52.6 | NC_006273.1 | + | 185868 | 0.67 | 0.992031 |
Target: 5'- ---aCCUCgUCUUGCcacGCGUCGAAGCGg -3' miRNA: 3'- ggaaGGGG-AGAGUGu--CGCAGCUUUGC- -5' |
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29965 | 5' | -52.6 | NC_006273.1 | + | 187934 | 0.68 | 0.981124 |
Target: 5'- uCCUcgUCCCCgaacucgccgcgCUCGCgGGCGUcCGAGACc -3' miRNA: 3'- -GGA--AGGGGa-----------GAGUG-UCGCA-GCUUUGc -5' |
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29965 | 5' | -52.6 | NC_006273.1 | + | 191535 | 0.7 | 0.95207 |
Target: 5'- uCCUUCCCCgugCUUACAGCcuuccccUGAAACc -3' miRNA: 3'- -GGAAGGGGa--GAGUGUCGca-----GCUUUGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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