miRNA display CGI


Results 1 - 20 of 298 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29970 3' -57.6 NC_006273.1 + 124846 0.65 0.939527
Target:  5'- cCAGCGGUccGUGGAagaGCGGCggcagcacgcauaGCGCGUc -3'
miRNA:   3'- -GUCGCCG--CAUCUgg-CGCUGa------------UGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 143266 0.66 0.938621
Target:  5'- aUAGCGGCGauugAGGuuGCGAgaccagauucauCGCGCu -3'
miRNA:   3'- -GUCGCCGCa---UCUggCGCUgau---------GCGCG- -5'
29970 3' -57.6 NC_006273.1 + 140341 0.66 0.938621
Target:  5'- cCGGCGGC-UAGGCCGagggacccccggucaCGACUG-GCGg -3'
miRNA:   3'- -GUCGCCGcAUCUGGC---------------GCUGAUgCGCg -5'
29970 3' -57.6 NC_006273.1 + 13302 0.66 0.936784
Target:  5'- aGGCGG-GUAGGCUGCcgaacGACggaUAUGCGUc -3'
miRNA:   3'- gUCGCCgCAUCUGGCG-----CUG---AUGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 86787 0.66 0.936784
Target:  5'- gCAGac-CGUGGACCGCGuagACGgGCa -3'
miRNA:   3'- -GUCgccGCAUCUGGCGCugaUGCgCG- -5'
29970 3' -57.6 NC_006273.1 + 118291 0.66 0.936784
Target:  5'- aGGcCGGCGUGGugaacgccaguuGCCGCcucGCUAC-CGCg -3'
miRNA:   3'- gUC-GCCGCAUC------------UGGCGc--UGAUGcGCG- -5'
29970 3' -57.6 NC_006273.1 + 115598 0.66 0.936784
Target:  5'- gCGGaCGGUGcgGGuGCCGgGACaGCGUGCc -3'
miRNA:   3'- -GUC-GCCGCa-UC-UGGCgCUGaUGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 73171 0.66 0.936784
Target:  5'- gCAGaCGGCGgAGGCgGUaGACgcgGCGcCGCa -3'
miRNA:   3'- -GUC-GCCGCaUCUGgCG-CUGa--UGC-GCG- -5'
29970 3' -57.6 NC_006273.1 + 128248 0.66 0.93204
Target:  5'- -cGUGGUGUA-ACCGCGAUccuCGgGCa -3'
miRNA:   3'- guCGCCGCAUcUGGCGCUGau-GCgCG- -5'
29970 3' -57.6 NC_006273.1 + 113272 0.66 0.93204
Target:  5'- gAGCgucugucgGGCcaGGugCGCGACgACGUGCu -3'
miRNA:   3'- gUCG--------CCGcaUCugGCGCUGaUGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 72641 0.66 0.93204
Target:  5'- uCAGCgcgGGCGUcGAa-GCG-CUugGCGCg -3'
miRNA:   3'- -GUCG---CCGCAuCUggCGCuGAugCGCG- -5'
29970 3' -57.6 NC_006273.1 + 168506 0.66 0.93204
Target:  5'- aGGCGGCuUAG--CGCGAgUUGCGCGUu -3'
miRNA:   3'- gUCGCCGcAUCugGCGCU-GAUGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 187393 0.66 0.93204
Target:  5'- uUAGCGaCGUGGACCGaCGACgaagACGaUGa -3'
miRNA:   3'- -GUCGCcGCAUCUGGC-GCUGa---UGC-GCg -5'
29970 3' -57.6 NC_006273.1 + 221803 0.66 0.93204
Target:  5'- aCGGCGGCccGGGCCGCccg-GCGgGUg -3'
miRNA:   3'- -GUCGCCGcaUCUGGCGcugaUGCgCG- -5'
29970 3' -57.6 NC_006273.1 + 147912 0.66 0.93204
Target:  5'- -cGCuGGCcucGGCCGUGACUACGgaCGCc -3'
miRNA:   3'- guCG-CCGcauCUGGCGCUGAUGC--GCG- -5'
29970 3' -57.6 NC_006273.1 + 184758 0.66 0.93204
Target:  5'- aAGCGuuGCaugaugAGGCCGUGGCUAuaguUGCGCa -3'
miRNA:   3'- gUCGC--CGca----UCUGGCGCUGAU----GCGCG- -5'
29970 3' -57.6 NC_006273.1 + 135415 0.66 0.93204
Target:  5'- -cGCaccuGUGUgaucuGGGCaGCGGCUGCGCGCu -3'
miRNA:   3'- guCGc---CGCA-----UCUGgCGCUGAUGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 148891 0.66 0.931553
Target:  5'- cCAGaCGGUGgagcaggaccugcUGGACC-UGACaACGCGCa -3'
miRNA:   3'- -GUC-GCCGC-------------AUCUGGcGCUGaUGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 109690 0.66 0.929089
Target:  5'- gGGCGGCGggaacgguagcggGGACgGUGGCaucggggaagagACGCGUg -3'
miRNA:   3'- gUCGCCGCa------------UCUGgCGCUGa-----------UGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 70172 0.66 0.927078
Target:  5'- aCA-CGuGCGUGGacgaccuguGCCGCGGCUACGaccucaCGCg -3'
miRNA:   3'- -GUcGC-CGCAUC---------UGGCGCUGAUGC------GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.