miRNA display CGI


Results 1 - 20 of 298 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29970 3' -57.6 NC_006273.1 + 124846 0.65 0.939527
Target:  5'- cCAGCGGUccGUGGAagaGCGGCggcagcacgcauaGCGCGUc -3'
miRNA:   3'- -GUCGCCG--CAUCUgg-CGCUGa------------UGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 35897 0.66 0.925547
Target:  5'- gCAGCGGCGgccagcAcagcgggagccaacGACCGCcgugGCGCGCa -3'
miRNA:   3'- -GUCGCCGCa-----U--------------CUGGCGcugaUGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 143266 0.66 0.938621
Target:  5'- aUAGCGGCGauugAGGuuGCGAgaccagauucauCGCGCu -3'
miRNA:   3'- -GUCGCCGCa---UCUggCGCUgau---------GCGCG- -5'
29970 3' -57.6 NC_006273.1 + 117209 0.66 0.921898
Target:  5'- aCAGCcGCaGUcAGGCCgccacgccgGCGGCUgggGCGCGCg -3'
miRNA:   3'- -GUCGcCG-CA-UCUGG---------CGCUGA---UGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 90905 0.66 0.927078
Target:  5'- gCAGCGaauuaaagaGCGUAGGCgGguacaaCGGC-ACGCGCa -3'
miRNA:   3'- -GUCGC---------CGCAUCUGgC------GCUGaUGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 64268 0.66 0.916501
Target:  5'- gCGGCGGCGgccgaagcGGAUgGCGcCuUACGCGa -3'
miRNA:   3'- -GUCGCCGCa-------UCUGgCGCuG-AUGCGCg -5'
29970 3' -57.6 NC_006273.1 + 100257 0.66 0.921898
Target:  5'- -uGgGGCGU--ACCgGUGACUugcaACGCGCg -3'
miRNA:   3'- guCgCCGCAucUGG-CGCUGA----UGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 120 0.66 0.921898
Target:  5'- aCGGCGaCGgcGAauaaaaGCGACgugcgGCGCGCa -3'
miRNA:   3'- -GUCGCcGCauCUgg----CGCUGa----UGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 109690 0.66 0.929089
Target:  5'- gGGCGGCGggaacgguagcggGGACgGUGGCaucggggaagagACGCGUg -3'
miRNA:   3'- gUCGCCGCa------------UCUGgCGCUGa-----------UGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 211469 0.66 0.925547
Target:  5'- -cGUGGUGUcaaAGACCGUGACgACcagcaugaagcugaGCGCc -3'
miRNA:   3'- guCGCCGCA---UCUGGCGCUGaUG--------------CGCG- -5'
29970 3' -57.6 NC_006273.1 + 196532 0.66 0.916501
Target:  5'- cCGGCugGGCGUGGGcaccCCGCGcGCgACGCuGCu -3'
miRNA:   3'- -GUCG--CCGCAUCU----GGCGC-UGaUGCG-CG- -5'
29970 3' -57.6 NC_006273.1 + 124111 0.66 0.927078
Target:  5'- gCGGCGGCGUcGACagaGCucGGCgUugGCGg -3'
miRNA:   3'- -GUCGCCGCAuCUGg--CG--CUG-AugCGCg -5'
29970 3' -57.6 NC_006273.1 + 105167 0.66 0.927078
Target:  5'- aAGCGGCGU---CCGCGAggACGgGg -3'
miRNA:   3'- gUCGCCGCAucuGGCGCUgaUGCgCg -5'
29970 3' -57.6 NC_006273.1 + 218201 0.66 0.916501
Target:  5'- gGGCGGCGgccGACgGCGgACgaccgGCaugGCGCg -3'
miRNA:   3'- gUCGCCGCau-CUGgCGC-UGa----UG---CGCG- -5'
29970 3' -57.6 NC_006273.1 + 101554 0.66 0.916501
Target:  5'- aCAGaaGCGccGugCGCGACggGCGCGg -3'
miRNA:   3'- -GUCgcCGCauCugGCGCUGa-UGCGCg -5'
29970 3' -57.6 NC_006273.1 + 128962 0.66 0.927078
Target:  5'- --aUGGCGUcGGCCGUGuuUuugaGCGCGCg -3'
miRNA:   3'- gucGCCGCAuCUGGCGCugA----UGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 39846 0.66 0.916501
Target:  5'- gCGGCGGCG-AG-CCGCucaaagucacGCUguggACGCGCa -3'
miRNA:   3'- -GUCGCCGCaUCuGGCGc---------UGA----UGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 201155 0.66 0.916501
Target:  5'- uUAGUGGuCGUG--UCGCGACauggACGUGCa -3'
miRNA:   3'- -GUCGCC-GCAUcuGGCGCUGa---UGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 148640 0.66 0.927078
Target:  5'- gAGaCGGCGuUGGACgCgGCGGCUGagGUGCu -3'
miRNA:   3'- gUC-GCCGC-AUCUG-G-CGCUGAUg-CGCG- -5'
29970 3' -57.6 NC_006273.1 + 234951 0.66 0.921898
Target:  5'- aCGGCGaCGgcGAauaaaaGCGACgugcgGCGCGCa -3'
miRNA:   3'- -GUCGCcGCauCUgg----CGCUGa----UGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.