miRNA display CGI


Results 41 - 60 of 298 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29970 3' -57.6 NC_006273.1 + 221803 0.66 0.93204
Target:  5'- aCGGCGGCccGGGCCGCccg-GCGgGUg -3'
miRNA:   3'- -GUCGCCGcaUCUGGCGcugaUGCgCG- -5'
29970 3' -57.6 NC_006273.1 + 90905 0.66 0.927078
Target:  5'- gCAGCGaauuaaagaGCGUAGGCgGguacaaCGGC-ACGCGCa -3'
miRNA:   3'- -GUCGC---------CGCAUCUGgC------GCUGaUGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 101554 0.66 0.916501
Target:  5'- aCAGaaGCGccGugCGCGACggGCGCGg -3'
miRNA:   3'- -GUCgcCGCauCugGCGCUGa-UGCGCg -5'
29970 3' -57.6 NC_006273.1 + 168506 0.66 0.93204
Target:  5'- aGGCGGCuUAG--CGCGAgUUGCGCGUu -3'
miRNA:   3'- gUCGCCGcAUCugGCGCU-GAUGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 163652 0.66 0.915949
Target:  5'- aAGaCGGCGcc--CCGCugugucaGGCUGCGCGCu -3'
miRNA:   3'- gUC-GCCGCaucuGGCG-------CUGAUGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 120 0.66 0.921898
Target:  5'- aCGGCGaCGgcGAauaaaaGCGACgugcgGCGCGCa -3'
miRNA:   3'- -GUCGCcGCauCUgg----CGCUGa----UGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 72641 0.66 0.93204
Target:  5'- uCAGCgcgGGCGUcGAa-GCG-CUugGCGCg -3'
miRNA:   3'- -GUCG---CCGCAuCUggCGCuGAugCGCG- -5'
29970 3' -57.6 NC_006273.1 + 115598 0.66 0.936784
Target:  5'- gCGGaCGGUGcgGGuGCCGgGACaGCGUGCc -3'
miRNA:   3'- -GUC-GCCGCa-UC-UGGCgCUGaUGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 118291 0.66 0.936784
Target:  5'- aGGcCGGCGUGGugaacgccaguuGCCGCcucGCUAC-CGCg -3'
miRNA:   3'- gUC-GCCGCAUC------------UGGCGc--UGAUGcGCG- -5'
29970 3' -57.6 NC_006273.1 + 234951 0.66 0.921898
Target:  5'- aCGGCGaCGgcGAauaaaaGCGACgugcgGCGCGCa -3'
miRNA:   3'- -GUCGCcGCauCUgg----CGCUGa----UGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 148640 0.66 0.927078
Target:  5'- gAGaCGGCGuUGGACgCgGCGGCUGagGUGCu -3'
miRNA:   3'- gUC-GCCGC-AUCUG-G-CGCUGAUg-CGCG- -5'
29970 3' -57.6 NC_006273.1 + 187393 0.66 0.93204
Target:  5'- uUAGCGaCGUGGACCGaCGACgaagACGaUGa -3'
miRNA:   3'- -GUCGCcGCAUCUGGC-GCUGa---UGC-GCg -5'
29970 3' -57.6 NC_006273.1 + 128248 0.66 0.93204
Target:  5'- -cGUGGUGUA-ACCGCGAUccuCGgGCa -3'
miRNA:   3'- guCGCCGCAUcUGGCGCUGau-GCgCG- -5'
29970 3' -57.6 NC_006273.1 + 113272 0.66 0.93204
Target:  5'- gAGCgucugucgGGCcaGGugCGCGACgACGUGCu -3'
miRNA:   3'- gUCG--------CCGcaUCugGCGCUGaUGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 45597 0.67 0.87963
Target:  5'- aGGCGGCcauGGCCGCGGCUcuacaacaACaGCaGCa -3'
miRNA:   3'- gUCGCCGcauCUGGCGCUGA--------UG-CG-CG- -5'
29970 3' -57.6 NC_006273.1 + 196999 0.67 0.910887
Target:  5'- -cGcCGGCG-GGAgCGCGAUuUGCGUGCc -3'
miRNA:   3'- guC-GCCGCaUCUgGCGCUG-AUGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 219845 0.67 0.910887
Target:  5'- gUAGCGGUGUAGcACCaaCGugUugGgGUc -3'
miRNA:   3'- -GUCGCCGCAUC-UGGc-GCugAugCgCG- -5'
29970 3' -57.6 NC_006273.1 + 40496 0.67 0.902665
Target:  5'- aGGCGGCccggcugcugccGGACagGCGACccgGCGCGCu -3'
miRNA:   3'- gUCGCCGca----------UCUGg-CGCUGa--UGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 163359 0.67 0.87963
Target:  5'- uCAGCGG-GUAG--UGCGGCaGCGCGUc -3'
miRNA:   3'- -GUCGCCgCAUCugGCGCUGaUGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 162193 0.67 0.87963
Target:  5'- gCAGCuGGUGaucGGCCGCGG-UGCGCuGCa -3'
miRNA:   3'- -GUCG-CCGCau-CUGGCGCUgAUGCG-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.