miRNA display CGI


Results 61 - 80 of 298 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29970 3' -57.6 NC_006273.1 + 157299 0.67 0.888907
Target:  5'- aCAGCGGCGgcgguggugacuggGGACgGUGAUgAUGCuGCu -3'
miRNA:   3'- -GUCGCCGCa-------------UCUGgCGCUGaUGCG-CG- -5'
29970 3' -57.6 NC_006273.1 + 90470 0.67 0.89276
Target:  5'- gCAGCGGUucGGGCgGCuugaGCggGCGCGCg -3'
miRNA:   3'- -GUCGCCGcaUCUGgCGc---UGa-UGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 164572 0.67 0.899014
Target:  5'- gAGCGGCGccAGACgcaGCGACguugucCGCGg -3'
miRNA:   3'- gUCGCCGCa-UCUGg--CGCUGau----GCGCg -5'
29970 3' -57.6 NC_006273.1 + 110373 0.67 0.89276
Target:  5'- -cGCGGCuacGUAcGACUGCGcggcCUGCuGCGCa -3'
miRNA:   3'- guCGCCG---CAU-CUGGCGCu---GAUG-CGCG- -5'
29970 3' -57.6 NC_006273.1 + 82920 0.67 0.886297
Target:  5'- gAGCGGC-UGGAggCGCaGCUGCGCGg -3'
miRNA:   3'- gUCGCCGcAUCUg-GCGcUGAUGCGCg -5'
29970 3' -57.6 NC_006273.1 + 142077 0.67 0.905057
Target:  5'- cCAGCGGCGacGGuuACCaCGGCU-UGCGCu -3'
miRNA:   3'- -GUCGCCGCa-UC--UGGcGCUGAuGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 31758 0.67 0.892123
Target:  5'- uUAGUGaCGUgaucuacuGGGCCGUcagucaaaacuacGACUACGCGCu -3'
miRNA:   3'- -GUCGCcGCA--------UCUGGCG-------------CUGAUGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 219845 0.67 0.910887
Target:  5'- gUAGCGGUGUAGcACCaaCGugUugGgGUc -3'
miRNA:   3'- -GUCGCCGCAUC-UGGc-GCugAugCgCG- -5'
29970 3' -57.6 NC_006273.1 + 196999 0.67 0.910887
Target:  5'- -cGcCGGCG-GGAgCGCGAUuUGCGUGCc -3'
miRNA:   3'- guC-GCCGCaUCUgGCGCUG-AUGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 128409 0.67 0.910887
Target:  5'- uCAGCGGCGUuaagcuGugCGCcccGGcCUGCGaaaGCg -3'
miRNA:   3'- -GUCGCCGCAu-----CugGCG---CU-GAUGCg--CG- -5'
29970 3' -57.6 NC_006273.1 + 27050 0.67 0.89276
Target:  5'- aAGCGGCGcaaGGGCCGgCGAgcccgaaaguCcAUGCGCa -3'
miRNA:   3'- gUCGCCGCa--UCUGGC-GCU----------GaUGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 207313 0.67 0.89276
Target:  5'- uCGGCGGUGgugacGGCgGCGAC-ACGgGUg -3'
miRNA:   3'- -GUCGCCGCau---CUGgCGCUGaUGCgCG- -5'
29970 3' -57.6 NC_006273.1 + 126859 0.67 0.89276
Target:  5'- gCAGCGGCGUAuGugCGuCGGugGCGaCGUc -3'
miRNA:   3'- -GUCGCCGCAU-CugGC-GCUgaUGC-GCG- -5'
29970 3' -57.6 NC_006273.1 + 147511 0.67 0.909738
Target:  5'- aUAGCGGCGgcccgcucgcucGGGagGCGAUggggGCGCGCc -3'
miRNA:   3'- -GUCGCCGCa-----------UCUggCGCUGa---UGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 56289 0.67 0.89276
Target:  5'- gGGCGG-GUAcGGCCGCGGgUGucCGCGg -3'
miRNA:   3'- gUCGCCgCAU-CUGGCGCUgAU--GCGCg -5'
29970 3' -57.6 NC_006273.1 + 197063 0.67 0.886297
Target:  5'- aCGGCGGCGgcagcGGCagcaGCGGCg--GCGCc -3'
miRNA:   3'- -GUCGCCGCau---CUGg---CGCUGaugCGCG- -5'
29970 3' -57.6 NC_006273.1 + 100920 0.67 0.87963
Target:  5'- aGGCGGC----GCCGCG-CUgcagACGCGCu -3'
miRNA:   3'- gUCGCCGcaucUGGCGCuGA----UGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 90263 0.67 0.899014
Target:  5'- uCGGCGGCGgcGaAUCGCccgGGCUGCccCGCa -3'
miRNA:   3'- -GUCGCCGCauC-UGGCG---CUGAUGc-GCG- -5'
29970 3' -57.6 NC_006273.1 + 165572 0.67 0.886297
Target:  5'- uCGGCGGCgGUAGGa-GCGACgcugACG-GCg -3'
miRNA:   3'- -GUCGCCG-CAUCUggCGCUGa---UGCgCG- -5'
29970 3' -57.6 NC_006273.1 + 156344 0.67 0.898398
Target:  5'- uGGUGGCGcgUGGGCCcagccugGCGcACUACGUGa -3'
miRNA:   3'- gUCGCCGC--AUCUGG-------CGC-UGAUGCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.