miRNA display CGI


Results 1 - 20 of 298 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29970 3' -57.6 NC_006273.1 + 16972 1.12 0.002296
Target:  5'- aCAGCGGCGUAGACCGCGACUACGCGCg -3'
miRNA:   3'- -GUCGCCGCAUCUGGCGCUGAUGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 167256 0.82 0.198684
Target:  5'- gGGCGGCGUGguGACCGUGGCggugGCGgGCa -3'
miRNA:   3'- gUCGCCGCAU--CUGGCGCUGa---UGCgCG- -5'
29970 3' -57.6 NC_006273.1 + 2236 0.82 0.208309
Target:  5'- cCGGCGGCGUcggGGACCGUG-CcGCGCGCc -3'
miRNA:   3'- -GUCGCCGCA---UCUGGCGCuGaUGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 197129 0.82 0.208309
Target:  5'- cCGGCGGCGUcggGGACCGUG-CcGCGCGCc -3'
miRNA:   3'- -GUCGCCGCA---UCUGGCGCuGaUGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 217943 0.8 0.274761
Target:  5'- cCGGCGGCGUaguGGACCGCGG-UAUGUGUg -3'
miRNA:   3'- -GUCGCCGCA---UCUGGCGCUgAUGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 112319 0.8 0.274761
Target:  5'- cCAGUGGCGUuucGCCuGCGGCUGCGaCGCg -3'
miRNA:   3'- -GUCGCCGCAuc-UGG-CGCUGAUGC-GCG- -5'
29970 3' -57.6 NC_006273.1 + 124051 0.79 0.30041
Target:  5'- cCAGCGGCGc-GGCCGCG-CUAUGCGg -3'
miRNA:   3'- -GUCGCCGCauCUGGCGCuGAUGCGCg -5'
29970 3' -57.6 NC_006273.1 + 189064 0.79 0.287361
Target:  5'- cCGGCGGCGUAGGCgGCcGCUucuUGCGCc -3'
miRNA:   3'- -GUCGCCGCAUCUGgCGcUGAu--GCGCG- -5'
29970 3' -57.6 NC_006273.1 + 72579 0.78 0.327869
Target:  5'- gCAGCuGCGgcGACCGCGGCUGC-CGUu -3'
miRNA:   3'- -GUCGcCGCauCUGGCGCUGAUGcGCG- -5'
29970 3' -57.6 NC_006273.1 + 58699 0.78 0.320834
Target:  5'- aCAGCcGCGU--GCCGCGGgUGCGCGCa -3'
miRNA:   3'- -GUCGcCGCAucUGGCGCUgAUGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 155913 0.78 0.320834
Target:  5'- gCAGCGGCGUGccGugCGCGAaugcAUGCGCg -3'
miRNA:   3'- -GUCGCCGCAU--CugGCGCUga--UGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 90316 0.78 0.335018
Target:  5'- cCAGCGGCGUcGcCCGCGGCUAggccgagacuCGCGUu -3'
miRNA:   3'- -GUCGCCGCAuCuGGCGCUGAU----------GCGCG- -5'
29970 3' -57.6 NC_006273.1 + 130214 0.78 0.357142
Target:  5'- cCGGCuaccugGGCG-AGGCCGCGGCgcCGCGCa -3'
miRNA:   3'- -GUCG------CCGCaUCUGGCGCUGauGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 106140 0.77 0.372452
Target:  5'- cCAGCGGCuu-GGCCGCGGCg--GCGCa -3'
miRNA:   3'- -GUCGCCGcauCUGGCGCUGaugCGCG- -5'
29970 3' -57.6 NC_006273.1 + 116944 0.77 0.404382
Target:  5'- aCGGCGGCc--GACCGUgacgGGCUACGUGCa -3'
miRNA:   3'- -GUCGCCGcauCUGGCG----CUGAUGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 76624 0.77 0.404382
Target:  5'- gAGCGGCGUcGACgGCGcACUG-GCGCg -3'
miRNA:   3'- gUCGCCGCAuCUGgCGC-UGAUgCGCG- -5'
29970 3' -57.6 NC_006273.1 + 64725 0.77 0.372452
Target:  5'- gGGCGcGCGUcuGGACgCGCGGCUAgaGCGCg -3'
miRNA:   3'- gUCGC-CGCA--UCUG-GCGCUGAUg-CGCG- -5'
29970 3' -57.6 NC_006273.1 + 149673 0.77 0.364741
Target:  5'- -cGCGGCGUuagguGGCUGUuGCUGCGCGCc -3'
miRNA:   3'- guCGCCGCAu----CUGGCGcUGAUGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 192636 0.76 0.455379
Target:  5'- -cGCGGCGUAGcucGCCGUcGCUAUGCGg -3'
miRNA:   3'- guCGCCGCAUC---UGGCGcUGAUGCGCg -5'
29970 3' -57.6 NC_006273.1 + 7698 0.76 0.420982
Target:  5'- gCGGCGGCGgcaguGGCCGCGGCaGCGgGg -3'
miRNA:   3'- -GUCGCCGCau---CUGGCGCUGaUGCgCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.