miRNA display CGI


Results 21 - 40 of 298 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29970 3' -57.6 NC_006273.1 + 233874 0.76 0.4545
Target:  5'- aAGCaGCGUAGuCCGCGGCgucgagcuccaucUGCGUGCg -3'
miRNA:   3'- gUCGcCGCAUCuGGCGCUG-------------AUGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 192636 0.76 0.455379
Target:  5'- -cGCGGCGUAGcucGCCGUcGCUAUGCGg -3'
miRNA:   3'- guCGCCGCAUC---UGGCGcUGAUGCGCg -5'
29970 3' -57.6 NC_006273.1 + 142297 0.76 0.45187
Target:  5'- gGGCGGCGUGGACgCGgugcucgaagaaaaCGacguggaGCUGCGCGCg -3'
miRNA:   3'- gUCGCCGCAUCUG-GC--------------GC-------UGAUGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 7698 0.76 0.420982
Target:  5'- gCGGCGGCGgcaguGGCCGCGGCaGCGgGg -3'
miRNA:   3'- -GUCGCCGCau---CUGGCGCUGaUGCgCg -5'
29970 3' -57.6 NC_006273.1 + 163078 0.75 0.464213
Target:  5'- gCGGCGGCGacGGCgGCGGCUGCGgGg -3'
miRNA:   3'- -GUCGCCGCauCUGgCGCUGAUGCgCg -5'
29970 3' -57.6 NC_006273.1 + 182895 0.75 0.473136
Target:  5'- cCGGUGGCGUuaGGGCCGUGugUGC-UGCu -3'
miRNA:   3'- -GUCGCCGCA--UCUGGCGCugAUGcGCG- -5'
29970 3' -57.6 NC_006273.1 + 79809 0.75 0.50965
Target:  5'- gAGCGcaucGCGUAGcaccaGCCGCGAaagGCGCGCu -3'
miRNA:   3'- gUCGC----CGCAUC-----UGGCGCUga-UGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 80386 0.75 0.50965
Target:  5'- gAGCGGCGgccguGGCgGCGGCaGCgGCGCa -3'
miRNA:   3'- gUCGCCGCau---CUGgCGCUGaUG-CGCG- -5'
29970 3' -57.6 NC_006273.1 + 17086 0.75 0.464213
Target:  5'- aGGCGcGCGUGGuCCGCGGCgacuuCGCGg -3'
miRNA:   3'- gUCGC-CGCAUCuGGCGCUGau---GCGCg -5'
29970 3' -57.6 NC_006273.1 + 177045 0.74 0.518965
Target:  5'- cCAGCGcGCGcUGGGaaGCG-CUGCGCGCc -3'
miRNA:   3'- -GUCGC-CGC-AUCUggCGCuGAUGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 140484 0.74 0.547292
Target:  5'- -uGUGGCugcuguacuGUGGACCGCGcaGCUuuuGCGCGCg -3'
miRNA:   3'- guCGCCG---------CAUCUGGCGC--UGA---UGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 148002 0.74 0.547292
Target:  5'- gCAGC-GCGUuaauCCGCGugUugGCGCg -3'
miRNA:   3'- -GUCGcCGCAucu-GGCGCugAugCGCG- -5'
29970 3' -57.6 NC_006273.1 + 73746 0.74 0.556845
Target:  5'- gCGGCGGCGgccgAGGCC-CGGCaGCgGCGCc -3'
miRNA:   3'- -GUCGCCGCa---UCUGGcGCUGaUG-CGCG- -5'
29970 3' -57.6 NC_006273.1 + 120770 0.74 0.528347
Target:  5'- gUAGCGGCgGUGGGCacaGCGGCUACGaUGg -3'
miRNA:   3'- -GUCGCCG-CAUCUGg--CGCUGAUGC-GCg -5'
29970 3' -57.6 NC_006273.1 + 110922 0.74 0.547292
Target:  5'- -uGCGGC-UGGACCGCGA--GCGCaGCg -3'
miRNA:   3'- guCGCCGcAUCUGGCGCUgaUGCG-CG- -5'
29970 3' -57.6 NC_006273.1 + 147962 0.74 0.518965
Target:  5'- gAGCaGCGUAGcGCCGUGuugGCGCGCg -3'
miRNA:   3'- gUCGcCGCAUC-UGGCGCugaUGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 170523 0.74 0.518965
Target:  5'- uCGGUGGUGccguugaaGGGCCGCGAgaGCGCGUg -3'
miRNA:   3'- -GUCGCCGCa-------UCUGGCGCUgaUGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 202559 0.74 0.518965
Target:  5'- uGGcCGGCGUGGcgGCCGaCGGCaGCGUGCu -3'
miRNA:   3'- gUC-GCCGCAUC--UGGC-GCUGaUGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 14100 0.74 0.518965
Target:  5'- uCAGUGGCucGGACCGcCGGCUGuuucUGCGCa -3'
miRNA:   3'- -GUCGCCGcaUCUGGC-GCUGAU----GCGCG- -5'
29970 3' -57.6 NC_006273.1 + 187430 0.74 0.537791
Target:  5'- -cGCGGCGgucuGuuauCCGCGACgACGCGUa -3'
miRNA:   3'- guCGCCGCau--Cu---GGCGCUGaUGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.