miRNA display CGI


Results 61 - 80 of 298 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29970 3' -57.6 NC_006273.1 + 153593 0.71 0.711985
Target:  5'- gCGGCGGCGU-GACCGgCGG-UGCGguCGCg -3'
miRNA:   3'- -GUCGCCGCAuCUGGC-GCUgAUGC--GCG- -5'
29970 3' -57.6 NC_006273.1 + 72799 0.71 0.683179
Target:  5'- gGGCGG-GUAGAgCCGCaGACgGCGCaGCa -3'
miRNA:   3'- gUCGCCgCAUCU-GGCG-CUGaUGCG-CG- -5'
29970 3' -57.6 NC_006273.1 + 166575 0.71 0.721474
Target:  5'- -cGCGGC----GCCGcCGGCUACGCGUc -3'
miRNA:   3'- guCGCCGcaucUGGC-GCUGAUGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 31290 0.71 0.683179
Target:  5'- -cGgGGCGUGcGGCCGCG-CUA-GCGCu -3'
miRNA:   3'- guCgCCGCAU-CUGGCGCuGAUgCGCG- -5'
29970 3' -57.6 NC_006273.1 + 93581 0.71 0.730893
Target:  5'- gAGCGGCGgcGGCCugcGCGGCcugUAC-CGCg -3'
miRNA:   3'- gUCGCCGCauCUGG---CGCUG---AUGcGCG- -5'
29970 3' -57.6 NC_006273.1 + 71867 0.71 0.730893
Target:  5'- gCAGCuGGUGUuucGACUGCGGCggcaACGgGCg -3'
miRNA:   3'- -GUCG-CCGCAu--CUGGCGCUGa---UGCgCG- -5'
29970 3' -57.6 NC_006273.1 + 118182 0.71 0.730893
Target:  5'- uGGCGGCcu-GACUGCGGCUGuCGCcCg -3'
miRNA:   3'- gUCGCCGcauCUGGCGCUGAU-GCGcG- -5'
29970 3' -57.6 NC_006273.1 + 151717 0.71 0.721474
Target:  5'- cCAGCGGaCGgaagGGcGCCGCGuC-GCGCGCc -3'
miRNA:   3'- -GUCGCC-GCa---UC-UGGCGCuGaUGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 157405 0.71 0.730893
Target:  5'- aGGCGGCGUGGACUGaGACgaggaggagggGC-CGCa -3'
miRNA:   3'- gUCGCCGCAUCUGGCgCUGa----------UGcGCG- -5'
29970 3' -57.6 NC_006273.1 + 112241 0.71 0.711985
Target:  5'- -cGCGGCGgGGGCuggCGCGAggACGUGCu -3'
miRNA:   3'- guCGCCGCaUCUG---GCGCUgaUGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 82290 0.71 0.721474
Target:  5'- ---gGGCGUGGGCCGCGGCguggaugACGagGCc -3'
miRNA:   3'- gucgCCGCAUCUGGCGCUGa------UGCg-CG- -5'
29970 3' -57.6 NC_006273.1 + 36699 0.71 0.730893
Target:  5'- gCAGCGaaCGUAGguagcgGCCGCGAgCggagGCGCGCg -3'
miRNA:   3'- -GUCGCc-GCAUC------UGGCGCU-Ga---UGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 24412 0.71 0.730893
Target:  5'- aAGCGGcCGUGGugGCCGUgcugGGCUGgGUGCa -3'
miRNA:   3'- gUCGCC-GCAUC--UGGCG----CUGAUgCGCG- -5'
29970 3' -57.6 NC_006273.1 + 20933 0.71 0.721474
Target:  5'- gGGCuGGCGUuucuagguGGCCGUGACgACGuCGCu -3'
miRNA:   3'- gUCG-CCGCAu-------CUGGCGCUGaUGC-GCG- -5'
29970 3' -57.6 NC_006273.1 + 91977 0.71 0.711985
Target:  5'- -cGCGGC--AGGCCGCGcCgGCGUGCu -3'
miRNA:   3'- guCGCCGcaUCUGGCGCuGaUGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 131478 0.71 0.721474
Target:  5'- -cGUGGCGUAcGCCGUG---GCGCGCa -3'
miRNA:   3'- guCGCCGCAUcUGGCGCugaUGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 167320 0.71 0.702435
Target:  5'- aCAGCGGCGgcaGCgGCGGCcacgGCgGCGCu -3'
miRNA:   3'- -GUCGCCGCaucUGgCGCUGa---UG-CGCG- -5'
29970 3' -57.6 NC_006273.1 + 194120 0.71 0.73464
Target:  5'- gUAGCGGCGguugugauagGGcgaccgcugaggcgaGCUGCGugUGCGUGCc -3'
miRNA:   3'- -GUCGCCGCa---------UC---------------UGGCGCugAUGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 38688 0.71 0.730893
Target:  5'- -cGCGaCGcGGACCGCGacaacuacggccGCUGCGUGCg -3'
miRNA:   3'- guCGCcGCaUCUGGCGC------------UGAUGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 162257 0.7 0.740234
Target:  5'- gCAGCGGCG-GGACuCGCGACggcccuucUGCGg -3'
miRNA:   3'- -GUCGCCGCaUCUG-GCGCUGau------GCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.