Results 21 - 40 of 298 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29970 | 3' | -57.6 | NC_006273.1 | + | 233874 | 0.76 | 0.4545 |
Target: 5'- aAGCaGCGUAGuCCGCGGCgucgagcuccaucUGCGUGCg -3' miRNA: 3'- gUCGcCGCAUCuGGCGCUG-------------AUGCGCG- -5' |
|||||||
29970 | 3' | -57.6 | NC_006273.1 | + | 115506 | 0.76 | 0.455379 |
Target: 5'- gCGGCGGCGaagaaaaucGGCCGCGAauggaaGCGCGCg -3' miRNA: 3'- -GUCGCCGCau-------CUGGCGCUga----UGCGCG- -5' |
|||||||
29970 | 3' | -57.6 | NC_006273.1 | + | 192636 | 0.76 | 0.455379 |
Target: 5'- -cGCGGCGUAGcucGCCGUcGCUAUGCGg -3' miRNA: 3'- guCGCCGCAUC---UGGCGcUGAUGCGCg -5' |
|||||||
29970 | 3' | -57.6 | NC_006273.1 | + | 12307 | 0.76 | 0.455379 |
Target: 5'- -uGUGGUGUuuAGACCGCGAUUGCGgGg -3' miRNA: 3'- guCGCCGCA--UCUGGCGCUGAUGCgCg -5' |
|||||||
29970 | 3' | -57.6 | NC_006273.1 | + | 163078 | 0.75 | 0.464213 |
Target: 5'- gCGGCGGCGacGGCgGCGGCUGCGgGg -3' miRNA: 3'- -GUCGCCGCauCUGgCGCUGAUGCgCg -5' |
|||||||
29970 | 3' | -57.6 | NC_006273.1 | + | 17086 | 0.75 | 0.464213 |
Target: 5'- aGGCGcGCGUGGuCCGCGGCgacuuCGCGg -3' miRNA: 3'- gUCGC-CGCAUCuGGCGCUGau---GCGCg -5' |
|||||||
29970 | 3' | -57.6 | NC_006273.1 | + | 182895 | 0.75 | 0.473136 |
Target: 5'- cCGGUGGCGUuaGGGCCGUGugUGC-UGCu -3' miRNA: 3'- -GUCGCCGCA--UCUGGCGCugAUGcGCG- -5' |
|||||||
29970 | 3' | -57.6 | NC_006273.1 | + | 80386 | 0.75 | 0.50965 |
Target: 5'- gAGCGGCGgccguGGCgGCGGCaGCgGCGCa -3' miRNA: 3'- gUCGCCGCau---CUGgCGCUGaUG-CGCG- -5' |
|||||||
29970 | 3' | -57.6 | NC_006273.1 | + | 79809 | 0.75 | 0.50965 |
Target: 5'- gAGCGcaucGCGUAGcaccaGCCGCGAaagGCGCGCu -3' miRNA: 3'- gUCGC----CGCAUC-----UGGCGCUga-UGCGCG- -5' |
|||||||
29970 | 3' | -57.6 | NC_006273.1 | + | 202559 | 0.74 | 0.518965 |
Target: 5'- uGGcCGGCGUGGcgGCCGaCGGCaGCGUGCu -3' miRNA: 3'- gUC-GCCGCAUC--UGGC-GCUGaUGCGCG- -5' |
|||||||
29970 | 3' | -57.6 | NC_006273.1 | + | 147962 | 0.74 | 0.518965 |
Target: 5'- gAGCaGCGUAGcGCCGUGuugGCGCGCg -3' miRNA: 3'- gUCGcCGCAUC-UGGCGCugaUGCGCG- -5' |
|||||||
29970 | 3' | -57.6 | NC_006273.1 | + | 170523 | 0.74 | 0.518965 |
Target: 5'- uCGGUGGUGccguugaaGGGCCGCGAgaGCGCGUg -3' miRNA: 3'- -GUCGCCGCa-------UCUGGCGCUgaUGCGCG- -5' |
|||||||
29970 | 3' | -57.6 | NC_006273.1 | + | 177045 | 0.74 | 0.518965 |
Target: 5'- cCAGCGcGCGcUGGGaaGCG-CUGCGCGCc -3' miRNA: 3'- -GUCGC-CGC-AUCUggCGCuGAUGCGCG- -5' |
|||||||
29970 | 3' | -57.6 | NC_006273.1 | + | 14100 | 0.74 | 0.518965 |
Target: 5'- uCAGUGGCucGGACCGcCGGCUGuuucUGCGCa -3' miRNA: 3'- -GUCGCCGcaUCUGGC-GCUGAU----GCGCG- -5' |
|||||||
29970 | 3' | -57.6 | NC_006273.1 | + | 120770 | 0.74 | 0.528347 |
Target: 5'- gUAGCGGCgGUGGGCacaGCGGCUACGaUGg -3' miRNA: 3'- -GUCGCCG-CAUCUGg--CGCUGAUGC-GCg -5' |
|||||||
29970 | 3' | -57.6 | NC_006273.1 | + | 187430 | 0.74 | 0.537791 |
Target: 5'- -cGCGGCGgucuGuuauCCGCGACgACGCGUa -3' miRNA: 3'- guCGCCGCau--Cu---GGCGCUGaUGCGCG- -5' |
|||||||
29970 | 3' | -57.6 | NC_006273.1 | + | 148002 | 0.74 | 0.547292 |
Target: 5'- gCAGC-GCGUuaauCCGCGugUugGCGCg -3' miRNA: 3'- -GUCGcCGCAucu-GGCGCugAugCGCG- -5' |
|||||||
29970 | 3' | -57.6 | NC_006273.1 | + | 140484 | 0.74 | 0.547292 |
Target: 5'- -uGUGGCugcuguacuGUGGACCGCGcaGCUuuuGCGCGCg -3' miRNA: 3'- guCGCCG---------CAUCUGGCGC--UGA---UGCGCG- -5' |
|||||||
29970 | 3' | -57.6 | NC_006273.1 | + | 110922 | 0.74 | 0.547292 |
Target: 5'- -uGCGGC-UGGACCGCGA--GCGCaGCg -3' miRNA: 3'- guCGCCGcAUCUGGCGCUgaUGCG-CG- -5' |
|||||||
29970 | 3' | -57.6 | NC_006273.1 | + | 73746 | 0.74 | 0.556845 |
Target: 5'- gCGGCGGCGgccgAGGCC-CGGCaGCgGCGCc -3' miRNA: 3'- -GUCGCCGCa---UCUGGcGCUGaUG-CGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home