miRNA display CGI


Results 41 - 60 of 298 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29970 3' -57.6 NC_006273.1 + 80532 0.73 0.576089
Target:  5'- gAGUaGGCGUAGGCCGCcuGCUcgcaggGCGUGCg -3'
miRNA:   3'- gUCG-CCGCAUCUGGCGc-UGA------UGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 62040 0.73 0.576089
Target:  5'- gAGCGGCGgc-ACCGCGGCgGCG-GCg -3'
miRNA:   3'- gUCGCCGCaucUGGCGCUGaUGCgCG- -5'
29970 3' -57.6 NC_006273.1 + 179775 0.73 0.585769
Target:  5'- cCGGCGGCGacgUGGGUCGCGAgUucauguugGCGCGCg -3'
miRNA:   3'- -GUCGCCGC---AUCUGGCGCUgA--------UGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 132544 0.73 0.585769
Target:  5'- aCAGCGuGCccGUGGA-CGCGGCcgGCGCGCc -3'
miRNA:   3'- -GUCGC-CG--CAUCUgGCGCUGa-UGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 149567 0.73 0.585769
Target:  5'- gUAGUGGCGUGGGCgaCGCGgACcACGCGa -3'
miRNA:   3'- -GUCGCCGCAUCUG--GCGC-UGaUGCGCg -5'
29970 3' -57.6 NC_006273.1 + 87130 0.73 0.585769
Target:  5'- uCGuaGGCGUAGuaACCGCGACgcaauuuuuUAUGCGCg -3'
miRNA:   3'- -GUcgCCGCAUC--UGGCGCUG---------AUGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 2007 0.73 0.605213
Target:  5'- gAGCGGCacggagacggAGGCCGcCGGCggggACGCGCc -3'
miRNA:   3'- gUCGCCGca--------UCUGGC-GCUGa---UGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 196900 0.73 0.605213
Target:  5'- gAGCGGCacggagacggAGGCCGcCGGCggggACGCGCc -3'
miRNA:   3'- gUCGCCGca--------UCUGGC-GCUGa---UGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 144312 0.73 0.614966
Target:  5'- uGGCGGCGUuGugCGCGGCggUGgGCu -3'
miRNA:   3'- gUCGCCGCAuCugGCGCUGauGCgCG- -5'
29970 3' -57.6 NC_006273.1 + 81597 0.73 0.614966
Target:  5'- aGGCGGCGgccgcGGCCGCGGCggagGCcgaagcggccuuGCGCu -3'
miRNA:   3'- gUCGCCGCau---CUGGCGCUGa---UG------------CGCG- -5'
29970 3' -57.6 NC_006273.1 + 142427 0.72 0.623753
Target:  5'- aCGGCGGUGgAGGCCGacuccacgucacaCGACgACGUGCa -3'
miRNA:   3'- -GUCGCCGCaUCUGGC-------------GCUGaUGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 91248 0.72 0.62473
Target:  5'- uCGGCGGCGU--GCCGCuGACccaaaauguCGCGCa -3'
miRNA:   3'- -GUCGCCGCAucUGGCG-CUGau-------GCGCG- -5'
29970 3' -57.6 NC_006273.1 + 99509 0.72 0.6345
Target:  5'- cCGGUGGUGgcGGCgGCGGCUGC-UGCu -3'
miRNA:   3'- -GUCGCCGCauCUGgCGCUGAUGcGCG- -5'
29970 3' -57.6 NC_006273.1 + 85791 0.72 0.6345
Target:  5'- gCAGCGGCaucUAGACCGCcgccACU-CGCGUg -3'
miRNA:   3'- -GUCGCCGc--AUCUGGCGc---UGAuGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 94939 0.72 0.648172
Target:  5'- gAGCGGgGUcGACCGCGACggcuuccgggucuCGCGg -3'
miRNA:   3'- gUCGCCgCAuCUGGCGCUGau-----------GCGCg -5'
29970 3' -57.6 NC_006273.1 + 103887 0.72 0.654027
Target:  5'- cUAGCucGGUGUAG-UCGCGGCgguUGCGCGCc -3'
miRNA:   3'- -GUCG--CCGCAUCuGGCGCUG---AUGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 26308 0.72 0.654027
Target:  5'- -uGCGGUGUguuggcuacgucGGACCGCGAUcgucaUGCGUGUc -3'
miRNA:   3'- guCGCCGCA------------UCUGGCGCUG-----AUGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 1966 0.72 0.66377
Target:  5'- -cGCGGCG-GGGCCgGCGACggggacgACGuCGCg -3'
miRNA:   3'- guCGCCGCaUCUGG-CGCUGa------UGC-GCG- -5'
29970 3' -57.6 NC_006273.1 + 113134 0.72 0.67349
Target:  5'- aGGCGGCG---GCCGCaGAggGCGCGCc -3'
miRNA:   3'- gUCGCCGCaucUGGCG-CUgaUGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 178959 0.72 0.67349
Target:  5'- gCGGCuagaGCGUGGGCCGCGugcCUgggaACGUGCg -3'
miRNA:   3'- -GUCGc---CGCAUCUGGCGCu--GA----UGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.