Results 61 - 80 of 298 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29970 | 3' | -57.6 | NC_006273.1 | + | 72799 | 0.71 | 0.683179 |
Target: 5'- gGGCGG-GUAGAgCCGCaGACgGCGCaGCa -3' miRNA: 3'- gUCGCCgCAUCU-GGCG-CUGaUGCG-CG- -5' |
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29970 | 3' | -57.6 | NC_006273.1 | + | 31290 | 0.71 | 0.683179 |
Target: 5'- -cGgGGCGUGcGGCCGCG-CUA-GCGCu -3' miRNA: 3'- guCgCCGCAU-CUGGCGCuGAUgCGCG- -5' |
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29970 | 3' | -57.6 | NC_006273.1 | + | 167320 | 0.71 | 0.702435 |
Target: 5'- aCAGCGGCGgcaGCgGCGGCcacgGCgGCGCu -3' miRNA: 3'- -GUCGCCGCaucUGgCGCUGa---UG-CGCG- -5' |
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29970 | 3' | -57.6 | NC_006273.1 | + | 153593 | 0.71 | 0.711985 |
Target: 5'- gCGGCGGCGU-GACCGgCGG-UGCGguCGCg -3' miRNA: 3'- -GUCGCCGCAuCUGGC-GCUgAUGC--GCG- -5' |
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29970 | 3' | -57.6 | NC_006273.1 | + | 112241 | 0.71 | 0.711985 |
Target: 5'- -cGCGGCGgGGGCuggCGCGAggACGUGCu -3' miRNA: 3'- guCGCCGCaUCUG---GCGCUgaUGCGCG- -5' |
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29970 | 3' | -57.6 | NC_006273.1 | + | 91977 | 0.71 | 0.711985 |
Target: 5'- -cGCGGC--AGGCCGCGcCgGCGUGCu -3' miRNA: 3'- guCGCCGcaUCUGGCGCuGaUGCGCG- -5' |
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29970 | 3' | -57.6 | NC_006273.1 | + | 151717 | 0.71 | 0.721474 |
Target: 5'- cCAGCGGaCGgaagGGcGCCGCGuC-GCGCGCc -3' miRNA: 3'- -GUCGCC-GCa---UC-UGGCGCuGaUGCGCG- -5' |
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29970 | 3' | -57.6 | NC_006273.1 | + | 82290 | 0.71 | 0.721474 |
Target: 5'- ---gGGCGUGGGCCGCGGCguggaugACGagGCc -3' miRNA: 3'- gucgCCGCAUCUGGCGCUGa------UGCg-CG- -5' |
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29970 | 3' | -57.6 | NC_006273.1 | + | 131478 | 0.71 | 0.721474 |
Target: 5'- -cGUGGCGUAcGCCGUG---GCGCGCa -3' miRNA: 3'- guCGCCGCAUcUGGCGCugaUGCGCG- -5' |
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29970 | 3' | -57.6 | NC_006273.1 | + | 166575 | 0.71 | 0.721474 |
Target: 5'- -cGCGGC----GCCGcCGGCUACGCGUc -3' miRNA: 3'- guCGCCGcaucUGGC-GCUGAUGCGCG- -5' |
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29970 | 3' | -57.6 | NC_006273.1 | + | 20933 | 0.71 | 0.721474 |
Target: 5'- gGGCuGGCGUuucuagguGGCCGUGACgACGuCGCu -3' miRNA: 3'- gUCG-CCGCAu-------CUGGCGCUGaUGC-GCG- -5' |
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29970 | 3' | -57.6 | NC_006273.1 | + | 36699 | 0.71 | 0.730893 |
Target: 5'- gCAGCGaaCGUAGguagcgGCCGCGAgCggagGCGCGCg -3' miRNA: 3'- -GUCGCc-GCAUC------UGGCGCU-Ga---UGCGCG- -5' |
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29970 | 3' | -57.6 | NC_006273.1 | + | 38688 | 0.71 | 0.730893 |
Target: 5'- -cGCGaCGcGGACCGCGacaacuacggccGCUGCGUGCg -3' miRNA: 3'- guCGCcGCaUCUGGCGC------------UGAUGCGCG- -5' |
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29970 | 3' | -57.6 | NC_006273.1 | + | 71867 | 0.71 | 0.730893 |
Target: 5'- gCAGCuGGUGUuucGACUGCGGCggcaACGgGCg -3' miRNA: 3'- -GUCG-CCGCAu--CUGGCGCUGa---UGCgCG- -5' |
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29970 | 3' | -57.6 | NC_006273.1 | + | 118182 | 0.71 | 0.730893 |
Target: 5'- uGGCGGCcu-GACUGCGGCUGuCGCcCg -3' miRNA: 3'- gUCGCCGcauCUGGCGCUGAU-GCGcG- -5' |
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29970 | 3' | -57.6 | NC_006273.1 | + | 24412 | 0.71 | 0.730893 |
Target: 5'- aAGCGGcCGUGGugGCCGUgcugGGCUGgGUGCa -3' miRNA: 3'- gUCGCC-GCAUC--UGGCG----CUGAUgCGCG- -5' |
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29970 | 3' | -57.6 | NC_006273.1 | + | 157405 | 0.71 | 0.730893 |
Target: 5'- aGGCGGCGUGGACUGaGACgaggaggagggGC-CGCa -3' miRNA: 3'- gUCGCCGCAUCUGGCgCUGa----------UGcGCG- -5' |
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29970 | 3' | -57.6 | NC_006273.1 | + | 93581 | 0.71 | 0.730893 |
Target: 5'- gAGCGGCGgcGGCCugcGCGGCcugUAC-CGCg -3' miRNA: 3'- gUCGCCGCauCUGG---CGCUG---AUGcGCG- -5' |
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29970 | 3' | -57.6 | NC_006273.1 | + | 194120 | 0.71 | 0.73464 |
Target: 5'- gUAGCGGCGguugugauagGGcgaccgcugaggcgaGCUGCGugUGCGUGCc -3' miRNA: 3'- -GUCGCCGCa---------UC---------------UGGCGCugAUGCGCG- -5' |
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29970 | 3' | -57.6 | NC_006273.1 | + | 162257 | 0.7 | 0.740234 |
Target: 5'- gCAGCGGCG-GGACuCGCGACggcccuucUGCGg -3' miRNA: 3'- -GUCGCCGCaUCUG-GCGCUGau------GCGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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