miRNA display CGI


Results 41 - 60 of 298 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29970 3' -57.6 NC_006273.1 + 18979 0.66 0.919765
Target:  5'- aCAGCaGCGccugGGGCCGCacgGACcuacugcccacggGCGCGCu -3'
miRNA:   3'- -GUCGcCGCa---UCUGGCG---CUGa------------UGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 233223 0.66 0.918686
Target:  5'- uGGaCGGCGUAGuuucggggauugugaACCGUGGCUGaggGUGUa -3'
miRNA:   3'- gUC-GCCGCAUC---------------UGGCGCUGAUg--CGCG- -5'
29970 3' -57.6 NC_006273.1 + 39846 0.66 0.916501
Target:  5'- gCGGCGGCG-AG-CCGCucaaagucacGCUguggACGCGCa -3'
miRNA:   3'- -GUCGCCGCaUCuGGCGc---------UGA----UGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 96051 0.66 0.916501
Target:  5'- -uGCGGCcgccACCGCGACUACaacuCGCc -3'
miRNA:   3'- guCGCCGcaucUGGCGCUGAUGc---GCG- -5'
29970 3' -57.6 NC_006273.1 + 203992 0.66 0.916501
Target:  5'- -cGCGGCGauucgGGcguGCCGCGAUgcCGCaGCu -3'
miRNA:   3'- guCGCCGCa----UC---UGGCGCUGauGCG-CG- -5'
29970 3' -57.6 NC_006273.1 + 218201 0.66 0.916501
Target:  5'- gGGCGGCGgccGACgGCGgACgaccgGCaugGCGCg -3'
miRNA:   3'- gUCGCCGCau-CUGgCGC-UGa----UG---CGCG- -5'
29970 3' -57.6 NC_006273.1 + 196532 0.66 0.916501
Target:  5'- cCGGCugGGCGUGGGcaccCCGCGcGCgACGCuGCu -3'
miRNA:   3'- -GUCG--CCGCAUCU----GGCGC-UGaUGCG-CG- -5'
29970 3' -57.6 NC_006273.1 + 101554 0.66 0.916501
Target:  5'- aCAGaaGCGccGugCGCGACggGCGCGg -3'
miRNA:   3'- -GUCgcCGCauCugGCGCUGa-UGCGCg -5'
29970 3' -57.6 NC_006273.1 + 1639 0.66 0.916501
Target:  5'- cCGGCugGGCGUGGGcaccCCGCGcGCgACGCuGCu -3'
miRNA:   3'- -GUCG--CCGCAUCU----GGCGC-UGaUGCG-CG- -5'
29970 3' -57.6 NC_006273.1 + 64268 0.66 0.916501
Target:  5'- gCGGCGGCGgccgaagcGGAUgGCGcCuUACGCGa -3'
miRNA:   3'- -GUCGCCGCa-------UCUGgCGCuG-AUGCGCg -5'
29970 3' -57.6 NC_006273.1 + 48594 0.66 0.916501
Target:  5'- uGGCGGCGccgGGaauaauguGCCGuCGACcgACGuCGCa -3'
miRNA:   3'- gUCGCCGCa--UC--------UGGC-GCUGa-UGC-GCG- -5'
29970 3' -57.6 NC_006273.1 + 201155 0.66 0.916501
Target:  5'- uUAGUGGuCGUG--UCGCGACauggACGUGCa -3'
miRNA:   3'- -GUCGCC-GCAUcuGGCGCUGa---UGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 166667 0.66 0.915949
Target:  5'- aCAGCGGCaaGUGGggcGCCGCGAUcgaagggUACGUc- -3'
miRNA:   3'- -GUCGCCG--CAUC---UGGCGCUG-------AUGCGcg -5'
29970 3' -57.6 NC_006273.1 + 163652 0.66 0.915949
Target:  5'- aAGaCGGCGcc--CCGCugugucaGGCUGCGCGCu -3'
miRNA:   3'- gUC-GCCGCaucuGGCG-------CUGAUGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 196999 0.67 0.910887
Target:  5'- -cGcCGGCG-GGAgCGCGAUuUGCGUGCc -3'
miRNA:   3'- guC-GCCGCaUCUgGCGCUG-AUGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 219845 0.67 0.910887
Target:  5'- gUAGCGGUGUAGcACCaaCGugUugGgGUc -3'
miRNA:   3'- -GUCGCCGCAUC-UGGc-GCugAugCgCG- -5'
29970 3' -57.6 NC_006273.1 + 165703 0.67 0.910887
Target:  5'- uCGGCGGcCGUcAGcuccuGCUGCGugUcgAUGCGCu -3'
miRNA:   3'- -GUCGCC-GCA-UC-----UGGCGCugA--UGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 103652 0.67 0.910887
Target:  5'- -cGCGGUGcAGACCGUaaucGAUgcacacguCGCGCa -3'
miRNA:   3'- guCGCCGCaUCUGGCG----CUGau------GCGCG- -5'
29970 3' -57.6 NC_006273.1 + 2106 0.67 0.910887
Target:  5'- -cGcCGGCG-GGAgCGCGAUuUGCGUGCc -3'
miRNA:   3'- guC-GCCGCaUCUgGCGCUG-AUGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 128409 0.67 0.910887
Target:  5'- uCAGCGGCGUuaagcuGugCGCcccGGcCUGCGaaaGCg -3'
miRNA:   3'- -GUCGCCGCAu-----CugGCG---CU-GAUGCg--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.