miRNA display CGI


Results 1 - 20 of 298 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29970 3' -57.6 NC_006273.1 + 15 0.68 0.865698
Target:  5'- cCGGCGGCGgucggGGugUGuCGGggGCGCGg -3'
miRNA:   3'- -GUCGCCGCa----UCugGC-GCUgaUGCGCg -5'
29970 3' -57.6 NC_006273.1 + 72 0.7 0.76771
Target:  5'- -uGCGuGUGUGGACgGCGACggcgacuaguUGCGUGUg -3'
miRNA:   3'- guCGC-CGCAUCUGgCGCUG----------AUGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 120 0.66 0.921898
Target:  5'- aCGGCGaCGgcGAauaaaaGCGACgugcgGCGCGCa -3'
miRNA:   3'- -GUCGCcGCauCUgg----CGCUGa----UGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 238 0.68 0.835579
Target:  5'- -cGgGGUGUguuggcGGGCCGUGuCUGCGUGUg -3'
miRNA:   3'- guCgCCGCA------UCUGGCGCuGAUGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 1222 0.68 0.868547
Target:  5'- -cGCGGCGuUucuggccaacagcacGGGCCGCG-CcAUGCGCa -3'
miRNA:   3'- guCGCCGC-A---------------UCUGGCGCuGaUGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 1639 0.66 0.916501
Target:  5'- cCGGCugGGCGUGGGcaccCCGCGcGCgACGCuGCu -3'
miRNA:   3'- -GUCG--CCGCAUCU----GGCGC-UGaUGCG-CG- -5'
29970 3' -57.6 NC_006273.1 + 1721 0.69 0.794196
Target:  5'- gCGGCGGUGgcGACUG-GGCcgACaGCGCa -3'
miRNA:   3'- -GUCGCCGCauCUGGCgCUGa-UG-CGCG- -5'
29970 3' -57.6 NC_006273.1 + 1966 0.72 0.66377
Target:  5'- -cGCGGCG-GGGCCgGCGACggggacgACGuCGCg -3'
miRNA:   3'- guCGCCGCaUCUGG-CGCUGa------UGC-GCG- -5'
29970 3' -57.6 NC_006273.1 + 2007 0.73 0.605213
Target:  5'- gAGCGGCacggagacggAGGCCGcCGGCggggACGCGCc -3'
miRNA:   3'- gUCGCCGca--------UCUGGC-GCUGa---UGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 2106 0.67 0.910887
Target:  5'- -cGcCGGCG-GGAgCGCGAUuUGCGUGCc -3'
miRNA:   3'- guC-GCCGCaUCUgGCGCUG-AUGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 2170 0.67 0.886297
Target:  5'- aCGGCGGCGgcagcGGCagcaGCGGCg--GCGCc -3'
miRNA:   3'- -GUCGCCGCau---CUGg---CGCUGaugCGCG- -5'
29970 3' -57.6 NC_006273.1 + 2236 0.82 0.208309
Target:  5'- cCGGCGGCGUcggGGACCGUG-CcGCGCGCc -3'
miRNA:   3'- -GUCGCCGCA---UCUGGCGCuGaUGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 2339 0.69 0.802768
Target:  5'- uGGCGGCGga-GCUGuCGcacuuuCUGCGCGCg -3'
miRNA:   3'- gUCGCCGCaucUGGC-GCu-----GAUGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 2426 0.68 0.833206
Target:  5'- -cGCGGCGgcugcugcccgagcUGGACCGCGagcagugggaGCggcCGCGCu -3'
miRNA:   3'- guCGCCGC--------------AUCUGGCGC----------UGau-GCGCG- -5'
29970 3' -57.6 NC_006273.1 + 4187 0.67 0.89276
Target:  5'- -cGCGGUccucgccauGaGGAUCGCGACagGCGCGUc -3'
miRNA:   3'- guCGCCG---------CaUCUGGCGCUGa-UGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 7698 0.76 0.420982
Target:  5'- gCGGCGGCGgcaguGGCCGCGGCaGCGgGg -3'
miRNA:   3'- -GUCGCCGCau---CUGGCGCUGaUGCgCg -5'
29970 3' -57.6 NC_006273.1 + 12307 0.76 0.455379
Target:  5'- -uGUGGUGUuuAGACCGCGAUUGCGgGg -3'
miRNA:   3'- guCGCCGCA--UCUGGCGCUGAUGCgCg -5'
29970 3' -57.6 NC_006273.1 + 13302 0.66 0.936784
Target:  5'- aGGCGG-GUAGGCUGCcgaacGACggaUAUGCGUc -3'
miRNA:   3'- gUCGCCgCAUCUGGCG-----CUG---AUGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 14100 0.74 0.518965
Target:  5'- uCAGUGGCucGGACCGcCGGCUGuuucUGCGCa -3'
miRNA:   3'- -GUCGCCGcaUCUGGC-GCUGAU----GCGCG- -5'
29970 3' -57.6 NC_006273.1 + 16972 1.12 0.002296
Target:  5'- aCAGCGGCGUAGACCGCGACUACGCGCg -3'
miRNA:   3'- -GUCGCCGCAUCUGGCGCUGAUGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.