miRNA display CGI


Results 21 - 40 of 298 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29970 3' -57.6 NC_006273.1 + 17086 0.75 0.464213
Target:  5'- aGGCGcGCGUGGuCCGCGGCgacuuCGCGg -3'
miRNA:   3'- gUCGC-CGCAUCuGGCGCUGau---GCGCg -5'
29970 3' -57.6 NC_006273.1 + 18979 0.66 0.919765
Target:  5'- aCAGCaGCGccugGGGCCGCacgGACcuacugcccacggGCGCGCu -3'
miRNA:   3'- -GUCGcCGCa---UCUGGCG---CUGa------------UGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 20357 0.68 0.835579
Target:  5'- aAGCGGUcccaacaccgGcGGACCGCGACccgGCgGUGCg -3'
miRNA:   3'- gUCGCCG----------CaUCUGGCGCUGa--UG-CGCG- -5'
29970 3' -57.6 NC_006273.1 + 20933 0.71 0.721474
Target:  5'- gGGCuGGCGUuucuagguGGCCGUGACgACGuCGCu -3'
miRNA:   3'- gUCG-CCGCAu-------CUGGCGCUGaUGC-GCG- -5'
29970 3' -57.6 NC_006273.1 + 21541 0.69 0.794196
Target:  5'- -cGCuGGCGUuucgaGGACgGCGGCgcgGCGCaGCg -3'
miRNA:   3'- guCG-CCGCA-----UCUGgCGCUGa--UGCG-CG- -5'
29970 3' -57.6 NC_006273.1 + 22318 0.7 0.749489
Target:  5'- gCAGCGGCGccaacgaacGCCGCGACUcCGaCGUc -3'
miRNA:   3'- -GUCGCCGCauc------UGGCGCUGAuGC-GCG- -5'
29970 3' -57.6 NC_006273.1 + 23326 0.66 0.921898
Target:  5'- gGGaCGGCcUGGGcgcccccacccCCGCGACccuCGCGCg -3'
miRNA:   3'- gUC-GCCGcAUCU-----------GGCGCUGau-GCGCG- -5'
29970 3' -57.6 NC_006273.1 + 24412 0.71 0.730893
Target:  5'- aAGCGGcCGUGGugGCCGUgcugGGCUGgGUGCa -3'
miRNA:   3'- gUCGCC-GCAUC--UGGCG----CUGAUgCGCG- -5'
29970 3' -57.6 NC_006273.1 + 26308 0.72 0.654027
Target:  5'- -uGCGGUGUguuggcuacgucGGACCGCGAUcgucaUGCGUGUc -3'
miRNA:   3'- guCGCCGCA------------UCUGGCGCUG-----AUGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 27050 0.67 0.89276
Target:  5'- aAGCGGCGcaaGGGCCGgCGAgcccgaaaguCcAUGCGCa -3'
miRNA:   3'- gUCGCCGCa--UCUGGC-GCU----------GaUGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 31290 0.71 0.683179
Target:  5'- -cGgGGCGUGcGGCCGCG-CUA-GCGCu -3'
miRNA:   3'- guCgCCGCAU-CUGGCGCuGAUgCGCG- -5'
29970 3' -57.6 NC_006273.1 + 31662 0.69 0.802768
Target:  5'- cCAGCuGCGUcgucaaGGACgGCGugUugGaCGCu -3'
miRNA:   3'- -GUCGcCGCA------UCUGgCGCugAugC-GCG- -5'
29970 3' -57.6 NC_006273.1 + 31758 0.67 0.892123
Target:  5'- uUAGUGaCGUgaucuacuGGGCCGUcagucaaaacuacGACUACGCGCu -3'
miRNA:   3'- -GUCGCcGCA--------UCUGGCG-------------CUGAUGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 33012 0.68 0.872762
Target:  5'- gCAGauccaGGUGgcGACCGCG-CUgGCgGCGCa -3'
miRNA:   3'- -GUCg----CCGCauCUGGCGCuGA-UG-CGCG- -5'
29970 3' -57.6 NC_006273.1 + 33813 0.69 0.827613
Target:  5'- --aUGGCGUAG-CCGCGAC-GCGgGUu -3'
miRNA:   3'- gucGCCGCAUCuGGCGCUGaUGCgCG- -5'
29970 3' -57.6 NC_006273.1 + 35491 0.69 0.78549
Target:  5'- --cCGGCGUGGAgC-UGACaUACGCGCa -3'
miRNA:   3'- gucGCCGCAUCUgGcGCUG-AUGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 35897 0.66 0.925547
Target:  5'- gCAGCGGCGgccagcAcagcgggagccaacGACCGCcgugGCGCGCa -3'
miRNA:   3'- -GUCGCCGCa-----U--------------CUGGCGcugaUGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 36536 0.69 0.8112
Target:  5'- aAGCGGCGcagcaucgAGGCCGagagccccaGAUcGCGCGCc -3'
miRNA:   3'- gUCGCCGCa-------UCUGGCg--------CUGaUGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 36699 0.71 0.730893
Target:  5'- gCAGCGaaCGUAGguagcgGCCGCGAgCggagGCGCGCg -3'
miRNA:   3'- -GUCGCc-GCAUC------UGGCGCU-Ga---UGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 37201 0.68 0.865698
Target:  5'- aAGCaGCGUuugcGA-CGCGGCcgACGCGCg -3'
miRNA:   3'- gUCGcCGCAu---CUgGCGCUGa-UGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.