miRNA display CGI


Results 41 - 60 of 298 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29970 3' -57.6 NC_006273.1 + 37344 0.69 0.794196
Target:  5'- gCAGCGGagGUGGGCCGgGGCccguuuUGCauaaGCGCg -3'
miRNA:   3'- -GUCGCCg-CAUCUGGCgCUG------AUG----CGCG- -5'
29970 3' -57.6 NC_006273.1 + 37821 0.68 0.843377
Target:  5'- aGGC-GCGUAGAuggcuCCGCGAgaucaUGCGCGUu -3'
miRNA:   3'- gUCGcCGCAUCU-----GGCGCUg----AUGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 38098 0.68 0.851
Target:  5'- uCGGCGGCGggcgccGACuCGCGccccaGCgccaGCGCGCc -3'
miRNA:   3'- -GUCGCCGCau----CUG-GCGC-----UGa---UGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 38688 0.71 0.730893
Target:  5'- -cGCGaCGcGGACCGCGacaacuacggccGCUGCGUGCg -3'
miRNA:   3'- guCGCcGCaUCUGGCGC------------UGAUGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 39739 0.69 0.827613
Target:  5'- gCAGaCGGUGgaguUGGACuUGCG-CUACGUGCa -3'
miRNA:   3'- -GUC-GCCGC----AUCUG-GCGCuGAUGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 39846 0.66 0.916501
Target:  5'- gCGGCGGCG-AG-CCGCucaaagucacGCUguggACGCGCa -3'
miRNA:   3'- -GUCGCCGCaUCuGGCGc---------UGA----UGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 40010 0.7 0.76771
Target:  5'- -uGCGuGUGUGGACgGCGACggcgacuaguUGCGUGUg -3'
miRNA:   3'- guCGC-CGCAUCUGgCGCUG----------AUGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 40058 0.66 0.921898
Target:  5'- aCGGCGaCGgcGAauaaaaGCGACgugcgGCGCGCa -3'
miRNA:   3'- -GUCGCcGCauCUgg----CGCUGa----UGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 40496 0.67 0.902665
Target:  5'- aGGCGGCccggcugcugccGGACagGCGACccgGCGCGCu -3'
miRNA:   3'- gUCGCCGca----------UCUGg-CGCUGa--UGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 40851 0.68 0.865698
Target:  5'- -cGUGGCGgguACCGuCGACgGCGUGCc -3'
miRNA:   3'- guCGCCGCaucUGGC-GCUGaUGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 41214 0.7 0.773986
Target:  5'- uCAGCGGCGUcccgAGAcgcuguuugugucaCCGCGGC-GCGUGg -3'
miRNA:   3'- -GUCGCCGCA----UCU--------------GGCGCUGaUGCGCg -5'
29970 3' -57.6 NC_006273.1 + 43076 0.67 0.886297
Target:  5'- -cGUGGCGgacuCUGCGACgcaACGCGUu -3'
miRNA:   3'- guCGCCGCaucuGGCGCUGa--UGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 43577 0.69 0.78549
Target:  5'- gCAGCGcCGUAGgcaaguGCCGCGGC-GCGUGUc -3'
miRNA:   3'- -GUCGCcGCAUC------UGGCGCUGaUGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 45458 0.7 0.749489
Target:  5'- gCAGaCGGCuGUGu-CgCGCGugUGCGCGCu -3'
miRNA:   3'- -GUC-GCCG-CAUcuG-GCGCugAUGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 45597 0.67 0.87963
Target:  5'- aGGCGGCcauGGCCGCGGCUcuacaacaACaGCaGCa -3'
miRNA:   3'- gUCGCCGcauCUGGCGCUGA--------UG-CG-CG- -5'
29970 3' -57.6 NC_006273.1 + 46149 0.68 0.865698
Target:  5'- aCGGUGGCGaacGCUGCGAC-ACGCuaGCg -3'
miRNA:   3'- -GUCGCCGCaucUGGCGCUGaUGCG--CG- -5'
29970 3' -57.6 NC_006273.1 + 48594 0.66 0.916501
Target:  5'- uGGCGGCGccgGGaauaauguGCCGuCGACcgACGuCGCa -3'
miRNA:   3'- gUCGCCGCa--UC--------UGGC-GCUGa-UGC-GCG- -5'
29970 3' -57.6 NC_006273.1 + 56137 0.68 0.851
Target:  5'- gGGCcGCGgAGGCgGCGACcgACGCGg -3'
miRNA:   3'- gUCGcCGCaUCUGgCGCUGa-UGCGCg -5'
29970 3' -57.6 NC_006273.1 + 56289 0.67 0.89276
Target:  5'- gGGCGG-GUAcGGCCGCGGgUGucCGCGg -3'
miRNA:   3'- gUCGCCgCAU-CUGGCGCUgAU--GCGCg -5'
29970 3' -57.6 NC_006273.1 + 58699 0.78 0.320834
Target:  5'- aCAGCcGCGU--GCCGCGGgUGCGCGCa -3'
miRNA:   3'- -GUCGcCGCAucUGGCGCUgAUGCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.