miRNA display CGI


Results 61 - 80 of 298 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29970 3' -57.6 NC_006273.1 + 59836 0.68 0.872762
Target:  5'- aCAGUGGCGU-----GCGGCUuucACGCGCc -3'
miRNA:   3'- -GUCGCCGCAucuggCGCUGA---UGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 60293 0.68 0.835579
Target:  5'- aCAGaCGGCGUgccgucgggAGACgGCGACUcgggACGC-Ca -3'
miRNA:   3'- -GUC-GCCGCA---------UCUGgCGCUGA----UGCGcG- -5'
29970 3' -57.6 NC_006273.1 + 61723 0.68 0.844147
Target:  5'- -cGCGGUGgaugcccaggacguGACCGCGAgcgccgUGCGCGCc -3'
miRNA:   3'- guCGCCGCau------------CUGGCGCUg-----AUGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 62040 0.73 0.576089
Target:  5'- gAGCGGCGgc-ACCGCGGCgGCG-GCg -3'
miRNA:   3'- gUCGCCGCaucUGGCGCUGaUGCgCG- -5'
29970 3' -57.6 NC_006273.1 + 63995 0.67 0.905057
Target:  5'- gCAGUGGCGgaggAGcauCCGUGACcucgagccaccaUGgGCGCg -3'
miRNA:   3'- -GUCGCCGCa---UCu--GGCGCUG------------AUgCGCG- -5'
29970 3' -57.6 NC_006273.1 + 64268 0.66 0.916501
Target:  5'- gCGGCGGCGgccgaagcGGAUgGCGcCuUACGCGa -3'
miRNA:   3'- -GUCGCCGCa-------UCUGgCGCuG-AUGCGCg -5'
29970 3' -57.6 NC_006273.1 + 64725 0.77 0.372452
Target:  5'- gGGCGcGCGUcuGGACgCGCGGCUAgaGCGCg -3'
miRNA:   3'- gUCGC-CGCA--UCUG-GCGCUGAUg-CGCG- -5'
29970 3' -57.6 NC_006273.1 + 65832 0.67 0.87963
Target:  5'- uCGGCGGCGcAG-CagGCGG-UACGCGCc -3'
miRNA:   3'- -GUCGCCGCaUCuGg-CGCUgAUGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 68010 0.66 0.92657
Target:  5'- cCGGCGGCGUcauggguggcggaGGACUGCcGGC-AgGUGUg -3'
miRNA:   3'- -GUCGCCGCA-------------UCUGGCG-CUGaUgCGCG- -5'
29970 3' -57.6 NC_006273.1 + 68130 0.7 0.758651
Target:  5'- gAGCGGC-UAGAUCGCucGCUGCGC-Ca -3'
miRNA:   3'- gUCGCCGcAUCUGGCGc-UGAUGCGcG- -5'
29970 3' -57.6 NC_006273.1 + 68798 0.7 0.746722
Target:  5'- gCAGCGacuggaacccggacGCGUAGcCgGCGGCgcCGCGCg -3'
miRNA:   3'- -GUCGC--------------CGCAUCuGgCGCUGauGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 69717 0.68 0.861367
Target:  5'- gCAGCGGCGaagguggugacgUaggggaacagagaccGGGCCGCGGCacCGUGCu -3'
miRNA:   3'- -GUCGCCGC------------A---------------UCUGGCGCUGauGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 70172 0.66 0.927078
Target:  5'- aCA-CGuGCGUGGacgaccuguGCCGCGGCUACGaccucaCGCg -3'
miRNA:   3'- -GUcGC-CGCAUC---------UGGCGCUGAUGC------GCG- -5'
29970 3' -57.6 NC_006273.1 + 71867 0.71 0.730893
Target:  5'- gCAGCuGGUGUuucGACUGCGGCggcaACGgGCg -3'
miRNA:   3'- -GUCG-CCGCAu--CUGGCGCUGa---UGCgCG- -5'
29970 3' -57.6 NC_006273.1 + 72579 0.78 0.327869
Target:  5'- gCAGCuGCGgcGACCGCGGCUGC-CGUu -3'
miRNA:   3'- -GUCGcCGCauCUGGCGCUGAUGcGCG- -5'
29970 3' -57.6 NC_006273.1 + 72641 0.66 0.93204
Target:  5'- uCAGCgcgGGCGUcGAa-GCG-CUugGCGCg -3'
miRNA:   3'- -GUCG---CCGCAuCUggCGCuGAugCGCG- -5'
29970 3' -57.6 NC_006273.1 + 72799 0.71 0.683179
Target:  5'- gGGCGG-GUAGAgCCGCaGACgGCGCaGCa -3'
miRNA:   3'- gUCGCCgCAUCU-GGCG-CUGaUGCG-CG- -5'
29970 3' -57.6 NC_006273.1 + 73171 0.66 0.936784
Target:  5'- gCAGaCGGCGgAGGCgGUaGACgcgGCGcCGCa -3'
miRNA:   3'- -GUC-GCCGCaUCUGgCG-CUGa--UGC-GCG- -5'
29970 3' -57.6 NC_006273.1 + 73746 0.74 0.556845
Target:  5'- gCGGCGGCGgccgAGGCC-CGGCaGCgGCGCc -3'
miRNA:   3'- -GUCGCCGCa---UCUGGcGCUGaUG-CGCG- -5'
29970 3' -57.6 NC_006273.1 + 74651 0.69 0.802768
Target:  5'- aGGCGGCGUAcuucuGAcCCGCGuucACgaaauuuaaGCGCGCg -3'
miRNA:   3'- gUCGCCGCAU-----CU-GGCGC---UGa--------UGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.