miRNA display CGI


Results 81 - 100 of 298 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29970 3' -57.6 NC_006273.1 + 75549 0.69 0.818662
Target:  5'- uCGGCGGCc--GACUuugaacaacugcgGCGACUguGCGCGCc -3'
miRNA:   3'- -GUCGCCGcauCUGG-------------CGCUGA--UGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 76624 0.77 0.404382
Target:  5'- gAGCGGCGUcGACgGCGcACUG-GCGCg -3'
miRNA:   3'- gUCGCCGCAuCUGgCGC-UGAUgCGCG- -5'
29970 3' -57.6 NC_006273.1 + 77020 0.68 0.872762
Target:  5'- gAGCGGCGUGcgcacGCCGCGcgaACGaCGCu -3'
miRNA:   3'- gUCGCCGCAUc----UGGCGCugaUGC-GCG- -5'
29970 3' -57.6 NC_006273.1 + 79809 0.75 0.50965
Target:  5'- gAGCGcaucGCGUAGcaccaGCCGCGAaagGCGCGCu -3'
miRNA:   3'- gUCGC----CGCAUC-----UGGCGCUga-UGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 80386 0.75 0.50965
Target:  5'- gAGCGGCGgccguGGCgGCGGCaGCgGCGCa -3'
miRNA:   3'- gUCGCCGCau---CUGgCGCUGaUG-CGCG- -5'
29970 3' -57.6 NC_006273.1 + 80532 0.73 0.576089
Target:  5'- gAGUaGGCGUAGGCCGCcuGCUcgcaggGCGUGCg -3'
miRNA:   3'- gUCG-CCGCAUCUGGCGc-UGA------UGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 81128 0.67 0.905057
Target:  5'- uCGGCGGCGUacgagGGGuuGCGgauggaGCUGgGCGg -3'
miRNA:   3'- -GUCGCCGCA-----UCUggCGC------UGAUgCGCg -5'
29970 3' -57.6 NC_006273.1 + 81597 0.73 0.614966
Target:  5'- aGGCGGCGgccgcGGCCGCGGCggagGCcgaagcggccuuGCGCu -3'
miRNA:   3'- gUCGCCGCau---CUGGCGCUGa---UG------------CGCG- -5'
29970 3' -57.6 NC_006273.1 + 82290 0.71 0.721474
Target:  5'- ---gGGCGUGGGCCGCGGCguggaugACGagGCc -3'
miRNA:   3'- gucgCCGCAUCUGGCGCUGa------UGCg-CG- -5'
29970 3' -57.6 NC_006273.1 + 82920 0.67 0.886297
Target:  5'- gAGCGGC-UGGAggCGCaGCUGCGCGg -3'
miRNA:   3'- gUCGCCGcAUCUg-GCGcUGAUGCGCg -5'
29970 3' -57.6 NC_006273.1 + 85739 0.67 0.89276
Target:  5'- gGGCGGCGUGGAgggagaaacCCGaucACUAC-CGCc -3'
miRNA:   3'- gUCGCCGCAUCU---------GGCgc-UGAUGcGCG- -5'
29970 3' -57.6 NC_006273.1 + 85791 0.72 0.6345
Target:  5'- gCAGCGGCaucUAGACCGCcgccACU-CGCGUg -3'
miRNA:   3'- -GUCGCCGc--AUCUGGCGc---UGAuGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 86541 0.68 0.851
Target:  5'- gCAGCGGCGgcaacaGCCaGCGACgauCGcCGCc -3'
miRNA:   3'- -GUCGCCGCauc---UGG-CGCUGau-GC-GCG- -5'
29970 3' -57.6 NC_006273.1 + 86787 0.66 0.936784
Target:  5'- gCAGac-CGUGGACCGCGuagACGgGCa -3'
miRNA:   3'- -GUCgccGCAUCUGGCGCugaUGCgCG- -5'
29970 3' -57.6 NC_006273.1 + 87130 0.73 0.585769
Target:  5'- uCGuaGGCGUAGuaACCGCGACgcaauuuuuUAUGCGCg -3'
miRNA:   3'- -GUcgCCGCAUC--UGGCGCUG---------AUGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 87699 0.68 0.864981
Target:  5'- aAGCGGCcacggGGGCUGCGACUGuugcugcuguuguUGCGa -3'
miRNA:   3'- gUCGCCGca---UCUGGCGCUGAU-------------GCGCg -5'
29970 3' -57.6 NC_006273.1 + 90263 0.67 0.899014
Target:  5'- uCGGCGGCGgcGaAUCGCccgGGCUGCccCGCa -3'
miRNA:   3'- -GUCGCCGCauC-UGGCG---CUGAUGc-GCG- -5'
29970 3' -57.6 NC_006273.1 + 90316 0.78 0.335018
Target:  5'- cCAGCGGCGUcGcCCGCGGCUAggccgagacuCGCGUu -3'
miRNA:   3'- -GUCGCCGCAuCuGGCGCUGAU----------GCGCG- -5'
29970 3' -57.6 NC_006273.1 + 90470 0.67 0.89276
Target:  5'- gCAGCGGUucGGGCgGCuugaGCggGCGCGCg -3'
miRNA:   3'- -GUCGCCGcaUCUGgCGc---UGa-UGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 90823 0.69 0.793331
Target:  5'- aCGGcCGGCacGUAGAgcccUCGCGccuccacaaaagcGCUGCGCGCa -3'
miRNA:   3'- -GUC-GCCG--CAUCU----GGCGC-------------UGAUGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.