miRNA display CGI


Results 21 - 40 of 298 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29970 3' -57.6 NC_006273.1 + 207313 0.67 0.89276
Target:  5'- uCGGCGGUGgugacGGCgGCGAC-ACGgGUg -3'
miRNA:   3'- -GUCGCCGCau---CUGgCGCUGaUGCgCG- -5'
29970 3' -57.6 NC_006273.1 + 204790 0.68 0.843377
Target:  5'- uGGCGGCGccGGuGCCGcCGGuCU-CGCGCa -3'
miRNA:   3'- gUCGCCGCa-UC-UGGC-GCU-GAuGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 203992 0.66 0.916501
Target:  5'- -cGCGGCGauucgGGcguGCCGCGAUgcCGCaGCu -3'
miRNA:   3'- guCGCCGCa----UC---UGGCGCUGauGCG-CG- -5'
29970 3' -57.6 NC_006273.1 + 202559 0.74 0.518965
Target:  5'- uGGcCGGCGUGGcgGCCGaCGGCaGCGUGCu -3'
miRNA:   3'- gUC-GCCGCAUC--UGGC-GCUGaUGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 201728 0.68 0.835579
Target:  5'- ---aGGCG-AGGCUGCG-CUGCuGCGCa -3'
miRNA:   3'- gucgCCGCaUCUGGCGCuGAUG-CGCG- -5'
29970 3' -57.6 NC_006273.1 + 201245 0.7 0.780206
Target:  5'- aAGCGGCGUugaaGGACCucuacgcggccuuuuGCGAgUGCG-GCg -3'
miRNA:   3'- gUCGCCGCA----UCUGG---------------CGCUgAUGCgCG- -5'
29970 3' -57.6 NC_006273.1 + 201155 0.66 0.916501
Target:  5'- uUAGUGGuCGUG--UCGCGACauggACGUGCa -3'
miRNA:   3'- -GUCGCC-GCAUcuGGCGCUGa---UGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 199442 0.66 0.921898
Target:  5'- gAGCGGgGUucACCugcaGCG-CUACGUGCg -3'
miRNA:   3'- gUCGCCgCAucUGG----CGCuGAUGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 198993 0.7 0.776659
Target:  5'- -cGCGGCGcuggugGGGCaggauaaguuggUGCGGCUGuCGCGCg -3'
miRNA:   3'- guCGCCGCa-----UCUG------------GCGCUGAU-GCGCG- -5'
29970 3' -57.6 NC_006273.1 + 197319 0.68 0.833206
Target:  5'- -cGCGGCGgcugcugcccgagcUGGACCGCGagcagugggaGCggcCGCGCu -3'
miRNA:   3'- guCGCCGC--------------AUCUGGCGC----------UGau-GCGCG- -5'
29970 3' -57.6 NC_006273.1 + 197232 0.69 0.802768
Target:  5'- uGGCGGCGga-GCUGuCGcacuuuCUGCGCGCg -3'
miRNA:   3'- gUCGCCGCaucUGGC-GCu-----GAUGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 197129 0.82 0.208309
Target:  5'- cCGGCGGCGUcggGGACCGUG-CcGCGCGCc -3'
miRNA:   3'- -GUCGCCGCA---UCUGGCGCuGaUGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 197063 0.67 0.886297
Target:  5'- aCGGCGGCGgcagcGGCagcaGCGGCg--GCGCc -3'
miRNA:   3'- -GUCGCCGCau---CUGg---CGCUGaugCGCG- -5'
29970 3' -57.6 NC_006273.1 + 197050 0.67 0.87963
Target:  5'- gCAGCGGCGacgacgguGGCgGCGACgacACG-GCg -3'
miRNA:   3'- -GUCGCCGCau------CUGgCGCUGa--UGCgCG- -5'
29970 3' -57.6 NC_006273.1 + 196999 0.67 0.910887
Target:  5'- -cGcCGGCG-GGAgCGCGAUuUGCGUGCc -3'
miRNA:   3'- guC-GCCGCaUCUgGCGCUG-AUGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 196995 0.69 0.827613
Target:  5'- gCAGCGGCGgcgacGGACgGCGGCgguaacaGCaGCu -3'
miRNA:   3'- -GUCGCCGCa----UCUGgCGCUGaug----CG-CG- -5'
29970 3' -57.6 NC_006273.1 + 196900 0.73 0.605213
Target:  5'- gAGCGGCacggagacggAGGCCGcCGGCggggACGCGCc -3'
miRNA:   3'- gUCGCCGca--------UCUGGC-GCUGa---UGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 196858 0.7 0.749489
Target:  5'- -cGCGGCG-GGGCCgGCGACggggacgACGuCGCc -3'
miRNA:   3'- guCGCCGCaUCUGG-CGCUGa------UGC-GCG- -5'
29970 3' -57.6 NC_006273.1 + 196691 0.68 0.843377
Target:  5'- gCAGCGGcCGUAGuugUCGCGGuCcGCGuCGCg -3'
miRNA:   3'- -GUCGCC-GCAUCu--GGCGCU-GaUGC-GCG- -5'
29970 3' -57.6 NC_006273.1 + 196532 0.66 0.916501
Target:  5'- cCGGCugGGCGUGGGcaccCCGCGcGCgACGCuGCu -3'
miRNA:   3'- -GUCG--CCGCAUCU----GGCGC-UGaUGCG-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.