miRNA display CGI


Results 41 - 60 of 298 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29970 3' -57.6 NC_006273.1 + 196115 0.68 0.868547
Target:  5'- -cGCGGCGuUucuggccaacagcacGGGCCGCG-CcAUGCGCa -3'
miRNA:   3'- guCGCCGC-A---------------UCUGGCGCuGaUGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 195799 0.67 0.899014
Target:  5'- -cGCaGGuCGUAc-CCGCG-CUGCGCGCu -3'
miRNA:   3'- guCG-CC-GCAUcuGGCGCuGAUGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 195131 0.68 0.835579
Target:  5'- -cGgGGUGUguuggcGGGCCGUGuCUGCGUGUg -3'
miRNA:   3'- guCgCCGCA------UCUGGCGCuGAUGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 194908 0.68 0.865698
Target:  5'- cCGGCGGCGgucggGGugUGuCGGggGCGCGg -3'
miRNA:   3'- -GUCGCCGCa----UCugGC-GCUgaUGCGCg -5'
29970 3' -57.6 NC_006273.1 + 194120 0.71 0.73464
Target:  5'- gUAGCGGCGguugugauagGGcgaccgcugaggcgaGCUGCGugUGCGUGCc -3'
miRNA:   3'- -GUCGCCGCa---------UC---------------UGGCGCugAUGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 192636 0.76 0.455379
Target:  5'- -cGCGGCGUAGcucGCCGUcGCUAUGCGg -3'
miRNA:   3'- guCGCCGCAUC---UGGCGcUGAUGCGCg -5'
29970 3' -57.6 NC_006273.1 + 192123 0.69 0.802768
Target:  5'- gCAGCGGC-UAGACaagucccagGCGGCUACagcuccaaGCGCc -3'
miRNA:   3'- -GUCGCCGcAUCUGg--------CGCUGAUG--------CGCG- -5'
29970 3' -57.6 NC_006273.1 + 190933 0.67 0.88498
Target:  5'- -cGCGGCGguccagcaacuGGCCGCGgaaacACUGC-CGCa -3'
miRNA:   3'- guCGCCGCau---------CUGGCGC-----UGAUGcGCG- -5'
29970 3' -57.6 NC_006273.1 + 189960 0.69 0.784613
Target:  5'- uCGGcCGGCGUGGGCgGCucgcggaGACUGgGCuGCa -3'
miRNA:   3'- -GUC-GCCGCAUCUGgCG-------CUGAUgCG-CG- -5'
29970 3' -57.6 NC_006273.1 + 189884 0.7 0.775769
Target:  5'- gUAGUGGCGcagcUGGGCCGUGaaaaccaGCUgguugaagaGCGCGCa -3'
miRNA:   3'- -GUCGCCGC----AUCUGGCGC-------UGA---------UGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 189064 0.79 0.287361
Target:  5'- cCGGCGGCGUAGGCgGCcGCUucuUGCGCc -3'
miRNA:   3'- -GUCGCCGCAUCUGgCGcUGAu--GCGCG- -5'
29970 3' -57.6 NC_006273.1 + 187903 0.7 0.758651
Target:  5'- aCGGCGGCuUGGACCGCcACaugUAC-CGCa -3'
miRNA:   3'- -GUCGCCGcAUCUGGCGcUG---AUGcGCG- -5'
29970 3' -57.6 NC_006273.1 + 187430 0.74 0.537791
Target:  5'- -cGCGGCGgucuGuuauCCGCGACgACGCGUa -3'
miRNA:   3'- guCGCCGCau--Cu---GGCGCUGaUGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 187393 0.66 0.93204
Target:  5'- uUAGCGaCGUGGACCGaCGACgaagACGaUGa -3'
miRNA:   3'- -GUCGCcGCAUCUGGC-GCUGa---UGC-GCg -5'
29970 3' -57.6 NC_006273.1 + 184758 0.66 0.93204
Target:  5'- aAGCGuuGCaugaugAGGCCGUGGCUAuaguUGCGCa -3'
miRNA:   3'- gUCGC--CGca----UCUGGCGCUGAU----GCGCG- -5'
29970 3' -57.6 NC_006273.1 + 182895 0.75 0.473136
Target:  5'- cCGGUGGCGUuaGGGCCGUGugUGC-UGCu -3'
miRNA:   3'- -GUCGCCGCA--UCUGGCGCugAUGcGCG- -5'
29970 3' -57.6 NC_006273.1 + 179775 0.73 0.585769
Target:  5'- cCGGCGGCGacgUGGGUCGCGAgUucauguugGCGCGCg -3'
miRNA:   3'- -GUCGCCGC---AUCUGGCGCUgA--------UGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 179688 0.69 0.794196
Target:  5'- -cGCGGUccGGuuuCCGCGGCUuCGUGCa -3'
miRNA:   3'- guCGCCGcaUCu--GGCGCUGAuGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 178959 0.72 0.67349
Target:  5'- gCGGCuagaGCGUGGGCCGCGugcCUgggaACGUGCg -3'
miRNA:   3'- -GUCGc---CGCAUCUGGCGCu--GA----UGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 178830 0.67 0.886297
Target:  5'- gCGGCGGCGgaggaggAGGCgGCGGUUugGauCGCa -3'
miRNA:   3'- -GUCGCCGCa------UCUGgCGCUGAugC--GCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.