miRNA display CGI


Results 61 - 80 of 298 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29970 3' -57.6 NC_006273.1 + 177045 0.74 0.518965
Target:  5'- cCAGCGcGCGcUGGGaaGCG-CUGCGCGCc -3'
miRNA:   3'- -GUCGC-CGC-AUCUggCGCuGAUGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 176724 0.69 0.8112
Target:  5'- aGGCGGUGguuugGGGCaaCGCGcGCUuggACGCGCu -3'
miRNA:   3'- gUCGCCGCa----UCUG--GCGC-UGA---UGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 176591 0.7 0.740234
Target:  5'- gCAGCGGCugacggugaacGUGGcucGCUGCGugUuuGCGCGUa -3'
miRNA:   3'- -GUCGCCG-----------CAUC---UGGCGCugA--UGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 173528 0.68 0.843377
Target:  5'- uCGGCGGCGUAca--GCGGgUcGCGCGCc -3'
miRNA:   3'- -GUCGCCGCAUcuggCGCUgA-UGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 172199 0.69 0.8112
Target:  5'- aGGCaaaGGCG-AGGCCGCGcCggcCGCGCc -3'
miRNA:   3'- gUCG---CCGCaUCUGGCGCuGau-GCGCG- -5'
29970 3' -57.6 NC_006273.1 + 170964 0.68 0.872762
Target:  5'- -cGCGGCcaGGugUGCGGgUucguaGCGCGCa -3'
miRNA:   3'- guCGCCGcaUCugGCGCUgA-----UGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 170523 0.74 0.518965
Target:  5'- uCGGUGGUGccguugaaGGGCCGCGAgaGCGCGUg -3'
miRNA:   3'- -GUCGCCGCa-------UCUGGCGCUgaUGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 170337 0.69 0.8112
Target:  5'- aCGGCGGCGUuguGAcauuCCGCGgaGCUGUGCGg -3'
miRNA:   3'- -GUCGCCGCAu--CU----GGCGC--UGAUGCGCg -5'
29970 3' -57.6 NC_006273.1 + 168615 0.68 0.83479
Target:  5'- uCAGCGcCG-AG-CCGCGGCUGCccgggucGCGCa -3'
miRNA:   3'- -GUCGCcGCaUCuGGCGCUGAUG-------CGCG- -5'
29970 3' -57.6 NC_006273.1 + 168506 0.66 0.93204
Target:  5'- aGGCGGCuUAG--CGCGAgUUGCGCGUu -3'
miRNA:   3'- gUCGCCGcAUCugGCGCU-GAUGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 167668 0.67 0.888907
Target:  5'- aCGGCGGgGUcGGCCGCcguucgucgucacggGGCgGCGCGa -3'
miRNA:   3'- -GUCGCCgCAuCUGGCG---------------CUGaUGCGCg -5'
29970 3' -57.6 NC_006273.1 + 167320 0.71 0.702435
Target:  5'- aCAGCGGCGgcaGCgGCGGCcacgGCgGCGCu -3'
miRNA:   3'- -GUCGCCGCaucUGgCGCUGa---UG-CGCG- -5'
29970 3' -57.6 NC_006273.1 + 167256 0.82 0.198684
Target:  5'- gGGCGGCGUGguGACCGUGGCggugGCGgGCa -3'
miRNA:   3'- gUCGCCGCAU--CUGGCGCUGa---UGCgCG- -5'
29970 3' -57.6 NC_006273.1 + 166667 0.66 0.915949
Target:  5'- aCAGCGGCaaGUGGggcGCCGCGAUcgaagggUACGUc- -3'
miRNA:   3'- -GUCGCCG--CAUC---UGGCGCUG-------AUGCGcg -5'
29970 3' -57.6 NC_006273.1 + 166648 0.69 0.801917
Target:  5'- -cGCGGCGUGGacgcGCCGUGGCagucgccucuugaUGCuGUGCa -3'
miRNA:   3'- guCGCCGCAUC----UGGCGCUG-------------AUG-CGCG- -5'
29970 3' -57.6 NC_006273.1 + 166575 0.71 0.721474
Target:  5'- -cGCGGC----GCCGcCGGCUACGCGUc -3'
miRNA:   3'- guCGCCGcaucUGGC-GCUGAUGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 165703 0.67 0.910887
Target:  5'- uCGGCGGcCGUcAGcuccuGCUGCGugUcgAUGCGCu -3'
miRNA:   3'- -GUCGCC-GCA-UC-----UGGCGCugA--UGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 165572 0.67 0.886297
Target:  5'- uCGGCGGCgGUAGGa-GCGACgcugACG-GCg -3'
miRNA:   3'- -GUCGCCG-CAUCUggCGCUGa---UGCgCG- -5'
29970 3' -57.6 NC_006273.1 + 164572 0.67 0.899014
Target:  5'- gAGCGGCGccAGACgcaGCGACguugucCGCGg -3'
miRNA:   3'- gUCGCCGCa-UCUGg--CGCUGau----GCGCg -5'
29970 3' -57.6 NC_006273.1 + 164550 0.67 0.905057
Target:  5'- gCGGCGGCGgucGGCC-CGcCaGCGUGCc -3'
miRNA:   3'- -GUCGCCGCau-CUGGcGCuGaUGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.