Results 21 - 40 of 298 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29970 | 3' | -57.6 | NC_006273.1 | + | 149567 | 0.73 | 0.585769 |
Target: 5'- gUAGUGGCGUGGGCgaCGCGgACcACGCGa -3' miRNA: 3'- -GUCGCCGCAUCUG--GCGC-UGaUGCGCg -5' |
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29970 | 3' | -57.6 | NC_006273.1 | + | 62040 | 0.73 | 0.576089 |
Target: 5'- gAGCGGCGgc-ACCGCGGCgGCG-GCg -3' miRNA: 3'- gUCGCCGCaucUGGCGCUGaUGCgCG- -5' |
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29970 | 3' | -57.6 | NC_006273.1 | + | 116944 | 0.77 | 0.404382 |
Target: 5'- aCGGCGGCc--GACCGUgacgGGCUACGUGCa -3' miRNA: 3'- -GUCGCCGcauCUGGCG----CUGAUGCGCG- -5' |
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29970 | 3' | -57.6 | NC_006273.1 | + | 76624 | 0.77 | 0.404382 |
Target: 5'- gAGCGGCGUcGACgGCGcACUG-GCGCg -3' miRNA: 3'- gUCGCCGCAuCUGgCGC-UGAUgCGCG- -5' |
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29970 | 3' | -57.6 | NC_006273.1 | + | 64725 | 0.77 | 0.372452 |
Target: 5'- gGGCGcGCGUcuGGACgCGCGGCUAgaGCGCg -3' miRNA: 3'- gUCGC-CGCA--UCUG-GCGCUGAUg-CGCG- -5' |
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29970 | 3' | -57.6 | NC_006273.1 | + | 149673 | 0.77 | 0.364741 |
Target: 5'- -cGCGGCGUuagguGGCUGUuGCUGCGCGCc -3' miRNA: 3'- guCGCCGCAu----CUGGCGcUGAUGCGCG- -5' |
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29970 | 3' | -57.6 | NC_006273.1 | + | 130214 | 0.78 | 0.357142 |
Target: 5'- cCGGCuaccugGGCG-AGGCCGCGGCgcCGCGCa -3' miRNA: 3'- -GUCG------CCGCaUCUGGCGCUGauGCGCG- -5' |
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29970 | 3' | -57.6 | NC_006273.1 | + | 72579 | 0.78 | 0.327869 |
Target: 5'- gCAGCuGCGgcGACCGCGGCUGC-CGUu -3' miRNA: 3'- -GUCGcCGCauCUGGCGCUGAUGcGCG- -5' |
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29970 | 3' | -57.6 | NC_006273.1 | + | 189064 | 0.79 | 0.287361 |
Target: 5'- cCGGCGGCGUAGGCgGCcGCUucuUGCGCc -3' miRNA: 3'- -GUCGCCGCAUCUGgCGcUGAu--GCGCG- -5' |
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29970 | 3' | -57.6 | NC_006273.1 | + | 197129 | 0.82 | 0.208309 |
Target: 5'- cCGGCGGCGUcggGGACCGUG-CcGCGCGCc -3' miRNA: 3'- -GUCGCCGCA---UCUGGCGCuGaUGCGCG- -5' |
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29970 | 3' | -57.6 | NC_006273.1 | + | 7698 | 0.76 | 0.420982 |
Target: 5'- gCGGCGGCGgcaguGGCCGCGGCaGCGgGg -3' miRNA: 3'- -GUCGCCGCau---CUGGCGCUGaUGCgCg -5' |
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29970 | 3' | -57.6 | NC_006273.1 | + | 142297 | 0.76 | 0.45187 |
Target: 5'- gGGCGGCGUGGACgCGgugcucgaagaaaaCGacguggaGCUGCGCGCg -3' miRNA: 3'- gUCGCCGCAUCUG-GC--------------GC-------UGAUGCGCG- -5' |
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29970 | 3' | -57.6 | NC_006273.1 | + | 73746 | 0.74 | 0.556845 |
Target: 5'- gCGGCGGCGgccgAGGCC-CGGCaGCgGCGCc -3' miRNA: 3'- -GUCGCCGCa---UCUGGcGCUGaUG-CGCG- -5' |
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29970 | 3' | -57.6 | NC_006273.1 | + | 148002 | 0.74 | 0.547292 |
Target: 5'- gCAGC-GCGUuaauCCGCGugUugGCGCg -3' miRNA: 3'- -GUCGcCGCAucu-GGCGCugAugCGCG- -5' |
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29970 | 3' | -57.6 | NC_006273.1 | + | 140484 | 0.74 | 0.547292 |
Target: 5'- -uGUGGCugcuguacuGUGGACCGCGcaGCUuuuGCGCGCg -3' miRNA: 3'- guCGCCG---------CAUCUGGCGC--UGA---UGCGCG- -5' |
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29970 | 3' | -57.6 | NC_006273.1 | + | 187430 | 0.74 | 0.537791 |
Target: 5'- -cGCGGCGgucuGuuauCCGCGACgACGCGUa -3' miRNA: 3'- guCGCCGCau--Cu---GGCGCUGaUGCGCG- -5' |
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29970 | 3' | -57.6 | NC_006273.1 | + | 147962 | 0.74 | 0.518965 |
Target: 5'- gAGCaGCGUAGcGCCGUGuugGCGCGCg -3' miRNA: 3'- gUCGcCGCAUC-UGGCGCugaUGCGCG- -5' |
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29970 | 3' | -57.6 | NC_006273.1 | + | 182895 | 0.75 | 0.473136 |
Target: 5'- cCGGUGGCGUuaGGGCCGUGugUGC-UGCu -3' miRNA: 3'- -GUCGCCGCA--UCUGGCGCugAUGcGCG- -5' |
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29970 | 3' | -57.6 | NC_006273.1 | + | 163078 | 0.75 | 0.464213 |
Target: 5'- gCGGCGGCGacGGCgGCGGCUGCGgGg -3' miRNA: 3'- -GUCGCCGCauCUGgCGCUGAUGCgCg -5' |
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29970 | 3' | -57.6 | NC_006273.1 | + | 192636 | 0.76 | 0.455379 |
Target: 5'- -cGCGGCGUAGcucGCCGUcGCUAUGCGg -3' miRNA: 3'- guCGCCGCAUC---UGGCGcUGAUGCGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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