miRNA display CGI


Results 41 - 60 of 298 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29970 3' -57.6 NC_006273.1 + 149673 0.77 0.364741
Target:  5'- -cGCGGCGUuagguGGCUGUuGCUGCGCGCc -3'
miRNA:   3'- guCGCCGCAu----CUGGCGcUGAUGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 130214 0.78 0.357142
Target:  5'- cCGGCuaccugGGCG-AGGCCGCGGCgcCGCGCa -3'
miRNA:   3'- -GUCG------CCGCaUCUGGCGCUGauGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 72579 0.78 0.327869
Target:  5'- gCAGCuGCGgcGACCGCGGCUGC-CGUu -3'
miRNA:   3'- -GUCGcCGCauCUGGCGCUGAUGcGCG- -5'
29970 3' -57.6 NC_006273.1 + 189064 0.79 0.287361
Target:  5'- cCGGCGGCGUAGGCgGCcGCUucuUGCGCc -3'
miRNA:   3'- -GUCGCCGCAUCUGgCGcUGAu--GCGCG- -5'
29970 3' -57.6 NC_006273.1 + 197129 0.82 0.208309
Target:  5'- cCGGCGGCGUcggGGACCGUG-CcGCGCGCc -3'
miRNA:   3'- -GUCGCCGCA---UCUGGCGCuGaUGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 147962 0.74 0.518965
Target:  5'- gAGCaGCGUAGcGCCGUGuugGCGCGCg -3'
miRNA:   3'- gUCGcCGCAUC-UGGCGCugaUGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 187430 0.74 0.537791
Target:  5'- -cGCGGCGgucuGuuauCCGCGACgACGCGUa -3'
miRNA:   3'- guCGCCGCau--Cu---GGCGCUGaUGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 167320 0.71 0.702435
Target:  5'- aCAGCGGCGgcaGCgGCGGCcacgGCgGCGCu -3'
miRNA:   3'- -GUCGCCGCaucUGgCGCUGa---UG-CGCG- -5'
29970 3' -57.6 NC_006273.1 + 72799 0.71 0.683179
Target:  5'- gGGCGG-GUAGAgCCGCaGACgGCGCaGCa -3'
miRNA:   3'- gUCGCCgCAUCU-GGCG-CUGaUGCG-CG- -5'
29970 3' -57.6 NC_006273.1 + 31290 0.71 0.683179
Target:  5'- -cGgGGCGUGcGGCCGCG-CUA-GCGCu -3'
miRNA:   3'- guCgCCGCAU-CUGGCGCuGAUgCGCG- -5'
29970 3' -57.6 NC_006273.1 + 103887 0.72 0.654027
Target:  5'- cUAGCucGGUGUAG-UCGCGGCgguUGCGCGCc -3'
miRNA:   3'- -GUCG--CCGCAUCuGGCGCUG---AUGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 94939 0.72 0.648172
Target:  5'- gAGCGGgGUcGACCGCGACggcuuccgggucuCGCGg -3'
miRNA:   3'- gUCGCCgCAuCUGGCGCUGau-----------GCGCg -5'
29970 3' -57.6 NC_006273.1 + 99509 0.72 0.6345
Target:  5'- cCGGUGGUGgcGGCgGCGGCUGC-UGCu -3'
miRNA:   3'- -GUCGCCGCauCUGgCGCUGAUGcGCG- -5'
29970 3' -57.6 NC_006273.1 + 142427 0.72 0.623753
Target:  5'- aCGGCGGUGgAGGCCGacuccacgucacaCGACgACGUGCa -3'
miRNA:   3'- -GUCGCCGCaUCUGGC-------------GCUGaUGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 196900 0.73 0.605213
Target:  5'- gAGCGGCacggagacggAGGCCGcCGGCggggACGCGCc -3'
miRNA:   3'- gUCGCCGca--------UCUGGC-GCUGa---UGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 149567 0.73 0.585769
Target:  5'- gUAGUGGCGUGGGCgaCGCGgACcACGCGa -3'
miRNA:   3'- -GUCGCCGCAUCUG--GCGC-UGaUGCGCg -5'
29970 3' -57.6 NC_006273.1 + 62040 0.73 0.576089
Target:  5'- gAGCGGCGgc-ACCGCGGCgGCG-GCg -3'
miRNA:   3'- gUCGCCGCaucUGGCGCUGaUGCgCG- -5'
29970 3' -57.6 NC_006273.1 + 73746 0.74 0.556845
Target:  5'- gCGGCGGCGgccgAGGCC-CGGCaGCgGCGCc -3'
miRNA:   3'- -GUCGCCGCa---UCUGGcGCUGaUG-CGCG- -5'
29970 3' -57.6 NC_006273.1 + 148002 0.74 0.547292
Target:  5'- gCAGC-GCGUuaauCCGCGugUugGCGCg -3'
miRNA:   3'- -GUCGcCGCAucu-GGCGCugAugCGCG- -5'
29970 3' -57.6 NC_006273.1 + 140484 0.74 0.547292
Target:  5'- -uGUGGCugcuguacuGUGGACCGCGcaGCUuuuGCGCGCg -3'
miRNA:   3'- guCGCCG---------CAUCUGGCGC--UGA---UGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.