miRNA display CGI


Results 61 - 80 of 298 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29970 3' -57.6 NC_006273.1 + 62040 0.73 0.576089
Target:  5'- gAGCGGCGgc-ACCGCGGCgGCG-GCg -3'
miRNA:   3'- gUCGCCGCaucUGGCGCUGaUGCgCG- -5'
29970 3' -57.6 NC_006273.1 + 149567 0.73 0.585769
Target:  5'- gUAGUGGCGUGGGCgaCGCGgACcACGCGa -3'
miRNA:   3'- -GUCGCCGCAUCUG--GCGC-UGaUGCGCg -5'
29970 3' -57.6 NC_006273.1 + 36699 0.71 0.730893
Target:  5'- gCAGCGaaCGUAGguagcgGCCGCGAgCggagGCGCGCg -3'
miRNA:   3'- -GUCGCc-GCAUC------UGGCGCU-Ga---UGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 38688 0.71 0.730893
Target:  5'- -cGCGaCGcGGACCGCGacaacuacggccGCUGCGUGCg -3'
miRNA:   3'- guCGCcGCaUCUGGCGC------------UGAUGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 194120 0.71 0.73464
Target:  5'- gUAGCGGCGguugugauagGGcgaccgcugaggcgaGCUGCGugUGCGUGCc -3'
miRNA:   3'- -GUCGCCGCa---------UC---------------UGGCGCugAUGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 162257 0.7 0.740234
Target:  5'- gCAGCGGCG-GGACuCGCGACggcccuucUGCGg -3'
miRNA:   3'- -GUCGCCGCaUCUG-GCGCUGau------GCGCg -5'
29970 3' -57.6 NC_006273.1 + 68798 0.7 0.746722
Target:  5'- gCAGCGacuggaacccggacGCGUAGcCgGCGGCgcCGCGCg -3'
miRNA:   3'- -GUCGC--------------CGCAUCuGgCGCUGauGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 22318 0.7 0.749489
Target:  5'- gCAGCGGCGccaacgaacGCCGCGACUcCGaCGUc -3'
miRNA:   3'- -GUCGCCGCauc------UGGCGCUGAuGC-GCG- -5'
29970 3' -57.6 NC_006273.1 + 45458 0.7 0.749489
Target:  5'- gCAGaCGGCuGUGu-CgCGCGugUGCGCGCu -3'
miRNA:   3'- -GUC-GCCG-CAUcuG-GCGCugAUGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 113510 0.7 0.749489
Target:  5'- cCGGCGGCGgguuGcCCGgGGg-GCGCGCg -3'
miRNA:   3'- -GUCGCCGCau--CuGGCgCUgaUGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 151717 0.71 0.721474
Target:  5'- cCAGCGGaCGgaagGGcGCCGCGuC-GCGCGCc -3'
miRNA:   3'- -GUCGCC-GCa---UC-UGGCGCuGaUGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 112241 0.71 0.711985
Target:  5'- -cGCGGCGgGGGCuggCGCGAggACGUGCu -3'
miRNA:   3'- guCGCCGCaUCUG---GCGCUgaUGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 196900 0.73 0.605213
Target:  5'- gAGCGGCacggagacggAGGCCGcCGGCggggACGCGCc -3'
miRNA:   3'- gUCGCCGca--------UCUGGC-GCUGa---UGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 142427 0.72 0.623753
Target:  5'- aCGGCGGUGgAGGCCGacuccacgucacaCGACgACGUGCa -3'
miRNA:   3'- -GUCGCCGCaUCUGGC-------------GCUGaUGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 99509 0.72 0.6345
Target:  5'- cCGGUGGUGgcGGCgGCGGCUGC-UGCu -3'
miRNA:   3'- -GUCGCCGCauCUGgCGCUGAUGcGCG- -5'
29970 3' -57.6 NC_006273.1 + 94939 0.72 0.648172
Target:  5'- gAGCGGgGUcGACCGCGACggcuuccgggucuCGCGg -3'
miRNA:   3'- gUCGCCgCAuCUGGCGCUGau-----------GCGCg -5'
29970 3' -57.6 NC_006273.1 + 103887 0.72 0.654027
Target:  5'- cUAGCucGGUGUAG-UCGCGGCgguUGCGCGCc -3'
miRNA:   3'- -GUCG--CCGCAUCuGGCGCUG---AUGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 31290 0.71 0.683179
Target:  5'- -cGgGGCGUGcGGCCGCG-CUA-GCGCu -3'
miRNA:   3'- guCgCCGCAU-CUGGCGCuGAUgCGCG- -5'
29970 3' -57.6 NC_006273.1 + 72799 0.71 0.683179
Target:  5'- gGGCGG-GUAGAgCCGCaGACgGCGCaGCa -3'
miRNA:   3'- gUCGCCgCAUCU-GGCG-CUGaUGCG-CG- -5'
29970 3' -57.6 NC_006273.1 + 167320 0.71 0.702435
Target:  5'- aCAGCGGCGgcaGCgGCGGCcacgGCgGCGCu -3'
miRNA:   3'- -GUCGCCGCaucUGgCGCUGa---UG-CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.