Results 1 - 20 of 298 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29970 | 3' | -57.6 | NC_006273.1 | + | 16972 | 1.12 | 0.002296 |
Target: 5'- aCAGCGGCGUAGACCGCGACUACGCGCg -3' miRNA: 3'- -GUCGCCGCAUCUGGCGCUGAUGCGCG- -5' |
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29970 | 3' | -57.6 | NC_006273.1 | + | 177045 | 0.74 | 0.518965 |
Target: 5'- cCAGCGcGCGcUGGGaaGCG-CUGCGCGCc -3' miRNA: 3'- -GUCGC-CGC-AUCUggCGCuGAUGCGCG- -5' |
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29970 | 3' | -57.6 | NC_006273.1 | + | 120770 | 0.74 | 0.528347 |
Target: 5'- gUAGCGGCgGUGGGCacaGCGGCUACGaUGg -3' miRNA: 3'- -GUCGCCG-CAUCUGg--CGCUGAUGC-GCg -5' |
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29970 | 3' | -57.6 | NC_006273.1 | + | 143266 | 0.66 | 0.938621 |
Target: 5'- aUAGCGGCGauugAGGuuGCGAgaccagauucauCGCGCu -3' miRNA: 3'- -GUCGCCGCa---UCUggCGCUgau---------GCGCG- -5' |
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29970 | 3' | -57.6 | NC_006273.1 | + | 124051 | 0.79 | 0.30041 |
Target: 5'- cCAGCGGCGc-GGCCGCG-CUAUGCGg -3' miRNA: 3'- -GUCGCCGCauCUGGCGCuGAUGCGCg -5' |
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29970 | 3' | -57.6 | NC_006273.1 | + | 155913 | 0.78 | 0.320834 |
Target: 5'- gCAGCGGCGUGccGugCGCGAaugcAUGCGCg -3' miRNA: 3'- -GUCGCCGCAU--CugGCGCUga--UGCGCG- -5' |
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29970 | 3' | -57.6 | NC_006273.1 | + | 90316 | 0.78 | 0.335018 |
Target: 5'- cCAGCGGCGUcGcCCGCGGCUAggccgagacuCGCGUu -3' miRNA: 3'- -GUCGCCGCAuCuGGCGCUGAU----------GCGCG- -5' |
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29970 | 3' | -57.6 | NC_006273.1 | + | 106140 | 0.77 | 0.372452 |
Target: 5'- cCAGCGGCuu-GGCCGCGGCg--GCGCa -3' miRNA: 3'- -GUCGCCGcauCUGGCGCUGaugCGCG- -5' |
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29970 | 3' | -57.6 | NC_006273.1 | + | 115506 | 0.76 | 0.455379 |
Target: 5'- gCGGCGGCGaagaaaaucGGCCGCGAauggaaGCGCGCg -3' miRNA: 3'- -GUCGCCGCau-------CUGGCGCUga----UGCGCG- -5' |
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29970 | 3' | -57.6 | NC_006273.1 | + | 14100 | 0.74 | 0.518965 |
Target: 5'- uCAGUGGCucGGACCGcCGGCUGuuucUGCGCa -3' miRNA: 3'- -GUCGCCGcaUCUGGC-GCUGAU----GCGCG- -5' |
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29970 | 3' | -57.6 | NC_006273.1 | + | 79809 | 0.75 | 0.50965 |
Target: 5'- gAGCGcaucGCGUAGcaccaGCCGCGAaagGCGCGCu -3' miRNA: 3'- gUCGC----CGCAUC-----UGGCGCUga-UGCGCG- -5' |
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29970 | 3' | -57.6 | NC_006273.1 | + | 12307 | 0.76 | 0.455379 |
Target: 5'- -uGUGGUGUuuAGACCGCGAUUGCGgGg -3' miRNA: 3'- guCGCCGCA--UCUGGCGCUGAUGCgCg -5' |
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29970 | 3' | -57.6 | NC_006273.1 | + | 2236 | 0.82 | 0.208309 |
Target: 5'- cCGGCGGCGUcggGGACCGUG-CcGCGCGCc -3' miRNA: 3'- -GUCGCCGCA---UCUGGCGCuGaUGCGCG- -5' |
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29970 | 3' | -57.6 | NC_006273.1 | + | 80386 | 0.75 | 0.50965 |
Target: 5'- gAGCGGCGgccguGGCgGCGGCaGCgGCGCa -3' miRNA: 3'- gUCGCCGCau---CUGgCGCUGaUG-CGCG- -5' |
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29970 | 3' | -57.6 | NC_006273.1 | + | 112319 | 0.8 | 0.274761 |
Target: 5'- cCAGUGGCGUuucGCCuGCGGCUGCGaCGCg -3' miRNA: 3'- -GUCGCCGCAuc-UGG-CGCUGAUGC-GCG- -5' |
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29970 | 3' | -57.6 | NC_006273.1 | + | 233874 | 0.76 | 0.4545 |
Target: 5'- aAGCaGCGUAGuCCGCGGCgucgagcuccaucUGCGUGCg -3' miRNA: 3'- gUCGcCGCAUCuGGCGCUG-------------AUGCGCG- -5' |
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29970 | 3' | -57.6 | NC_006273.1 | + | 202559 | 0.74 | 0.518965 |
Target: 5'- uGGcCGGCGUGGcgGCCGaCGGCaGCGUGCu -3' miRNA: 3'- gUC-GCCGCAUC--UGGC-GCUGaUGCGCG- -5' |
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29970 | 3' | -57.6 | NC_006273.1 | + | 170523 | 0.74 | 0.518965 |
Target: 5'- uCGGUGGUGccguugaaGGGCCGCGAgaGCGCGUg -3' miRNA: 3'- -GUCGCCGCa-------UCUGGCGCUgaUGCGCG- -5' |
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29970 | 3' | -57.6 | NC_006273.1 | + | 217943 | 0.8 | 0.274761 |
Target: 5'- cCGGCGGCGUaguGGACCGCGG-UAUGUGUg -3' miRNA: 3'- -GUCGCCGCA---UCUGGCGCUgAUGCGCG- -5' |
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29970 | 3' | -57.6 | NC_006273.1 | + | 58699 | 0.78 | 0.320834 |
Target: 5'- aCAGCcGCGU--GCCGCGGgUGCGCGCa -3' miRNA: 3'- -GUCGcCGCAucUGGCGCUgAUGCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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