miRNA display CGI


Results 21 - 40 of 298 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29970 3' -57.6 NC_006273.1 + 87130 0.73 0.585769
Target:  5'- uCGuaGGCGUAGuaACCGCGACgcaauuuuuUAUGCGCg -3'
miRNA:   3'- -GUcgCCGCAUC--UGGCGCUG---------AUGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 120770 0.74 0.528347
Target:  5'- gUAGCGGCgGUGGGCacaGCGGCUACGaUGg -3'
miRNA:   3'- -GUCGCCG-CAUCUGg--CGCUGAUGC-GCg -5'
29970 3' -57.6 NC_006273.1 + 12307 0.76 0.455379
Target:  5'- -uGUGGUGUuuAGACCGCGAUUGCGgGg -3'
miRNA:   3'- guCGCCGCA--UCUGGCGCUGAUGCgCg -5'
29970 3' -57.6 NC_006273.1 + 217943 0.8 0.274761
Target:  5'- cCGGCGGCGUaguGGACCGCGG-UAUGUGUg -3'
miRNA:   3'- -GUCGCCGCA---UCUGGCGCUgAUGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 91977 0.71 0.711985
Target:  5'- -cGCGGC--AGGCCGCGcCgGCGUGCu -3'
miRNA:   3'- guCGCCGcaUCUGGCGCuGaUGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 144312 0.73 0.614966
Target:  5'- uGGCGGCGUuGugCGCGGCggUGgGCu -3'
miRNA:   3'- gUCGCCGCAuCugGCGCUGauGCgCG- -5'
29970 3' -57.6 NC_006273.1 + 177045 0.74 0.518965
Target:  5'- cCAGCGcGCGcUGGGaaGCG-CUGCGCGCc -3'
miRNA:   3'- -GUCGC-CGC-AUCUggCGCuGAUGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 112319 0.8 0.274761
Target:  5'- cCAGUGGCGUuucGCCuGCGGCUGCGaCGCg -3'
miRNA:   3'- -GUCGCCGCAuc-UGG-CGCUGAUGC-GCG- -5'
29970 3' -57.6 NC_006273.1 + 81597 0.73 0.614966
Target:  5'- aGGCGGCGgccgcGGCCGCGGCggagGCcgaagcggccuuGCGCu -3'
miRNA:   3'- gUCGCCGCau---CUGGCGCUGa---UG------------CGCG- -5'
29970 3' -57.6 NC_006273.1 + 2236 0.82 0.208309
Target:  5'- cCGGCGGCGUcggGGACCGUG-CcGCGCGCc -3'
miRNA:   3'- -GUCGCCGCA---UCUGGCGCuGaUGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 170523 0.74 0.518965
Target:  5'- uCGGUGGUGccguugaaGGGCCGCGAgaGCGCGUg -3'
miRNA:   3'- -GUCGCCGCa-------UCUGGCGCUgaUGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 132544 0.73 0.585769
Target:  5'- aCAGCGuGCccGUGGA-CGCGGCcgGCGCGCc -3'
miRNA:   3'- -GUCGC-CG--CAUCUgGCGCUGa-UGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 80386 0.75 0.50965
Target:  5'- gAGCGGCGgccguGGCgGCGGCaGCgGCGCa -3'
miRNA:   3'- gUCGCCGCau---CUGgCGCUGaUG-CGCG- -5'
29970 3' -57.6 NC_006273.1 + 115506 0.76 0.455379
Target:  5'- gCGGCGGCGaagaaaaucGGCCGCGAauggaaGCGCGCg -3'
miRNA:   3'- -GUCGCCGCau-------CUGGCGCUga----UGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 90316 0.78 0.335018
Target:  5'- cCAGCGGCGUcGcCCGCGGCUAggccgagacuCGCGUu -3'
miRNA:   3'- -GUCGCCGCAuCuGGCGCUGAU----------GCGCG- -5'
29970 3' -57.6 NC_006273.1 + 124051 0.79 0.30041
Target:  5'- cCAGCGGCGc-GGCCGCG-CUAUGCGg -3'
miRNA:   3'- -GUCGCCGCauCUGGCGCuGAUGCGCg -5'
29970 3' -57.6 NC_006273.1 + 131478 0.71 0.721474
Target:  5'- -cGUGGCGUAcGCCGUG---GCGCGCa -3'
miRNA:   3'- guCGCCGCAUcUGGCGCugaUGCGCG- -5'
29970 3' -57.6 NC_006273.1 + 153593 0.71 0.711985
Target:  5'- gCGGCGGCGU-GACCGgCGG-UGCGguCGCg -3'
miRNA:   3'- -GUCGCCGCAuCUGGC-GCUgAUGC--GCG- -5'
29970 3' -57.6 NC_006273.1 + 1966 0.72 0.66377
Target:  5'- -cGCGGCG-GGGCCgGCGACggggacgACGuCGCg -3'
miRNA:   3'- guCGCCGCaUCUGG-CGCUGa------UGC-GCG- -5'
29970 3' -57.6 NC_006273.1 + 91248 0.72 0.62473
Target:  5'- uCGGCGGCGU--GCCGCuGACccaaaauguCGCGCa -3'
miRNA:   3'- -GUCGCCGCAucUGGCG-CUGau-------GCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.