Results 41 - 60 of 298 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29970 | 3' | -57.6 | NC_006273.1 | + | 113134 | 0.72 | 0.67349 |
Target: 5'- aGGCGGCG---GCCGCaGAggGCGCGCc -3' miRNA: 3'- gUCGCCGCaucUGGCG-CUgaUGCGCG- -5' |
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29970 | 3' | -57.6 | NC_006273.1 | + | 177045 | 0.74 | 0.518965 |
Target: 5'- cCAGCGcGCGcUGGGaaGCG-CUGCGCGCc -3' miRNA: 3'- -GUCGC-CGC-AUCUggCGCuGAUGCGCG- -5' |
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29970 | 3' | -57.6 | NC_006273.1 | + | 112319 | 0.8 | 0.274761 |
Target: 5'- cCAGUGGCGUuucGCCuGCGGCUGCGaCGCg -3' miRNA: 3'- -GUCGCCGCAuc-UGG-CGCUGAUGC-GCG- -5' |
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29970 | 3' | -57.6 | NC_006273.1 | + | 178959 | 0.72 | 0.67349 |
Target: 5'- gCGGCuagaGCGUGGGCCGCGugcCUgggaACGUGCg -3' miRNA: 3'- -GUCGc---CGCAUCUGGCGCu--GA----UGCGCG- -5' |
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29970 | 3' | -57.6 | NC_006273.1 | + | 2236 | 0.82 | 0.208309 |
Target: 5'- cCGGCGGCGUcggGGACCGUG-CcGCGCGCc -3' miRNA: 3'- -GUCGCCGCA---UCUGGCGCuGaUGCGCG- -5' |
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29970 | 3' | -57.6 | NC_006273.1 | + | 166648 | 0.69 | 0.801917 |
Target: 5'- -cGCGGCGUGGacgcGCCGUGGCagucgccucuugaUGCuGUGCa -3' miRNA: 3'- guCGCCGCAUC----UGGCGCUG-------------AUG-CGCG- -5' |
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29970 | 3' | -57.6 | NC_006273.1 | + | 124051 | 0.79 | 0.30041 |
Target: 5'- cCAGCGGCGc-GGCCGCG-CUAUGCGg -3' miRNA: 3'- -GUCGCCGCauCUGGCGCuGAUGCGCg -5' |
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29970 | 3' | -57.6 | NC_006273.1 | + | 37344 | 0.69 | 0.794196 |
Target: 5'- gCAGCGGagGUGGGCCGgGGCccguuuUGCauaaGCGCg -3' miRNA: 3'- -GUCGCCg-CAUCUGGCgCUG------AUG----CGCG- -5' |
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29970 | 3' | -57.6 | NC_006273.1 | + | 201245 | 0.7 | 0.780206 |
Target: 5'- aAGCGGCGUugaaGGACCucuacgcggccuuuuGCGAgUGCG-GCg -3' miRNA: 3'- gUCGCCGCA----UCUGG---------------CGCUgAUGCgCG- -5' |
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29970 | 3' | -57.6 | NC_006273.1 | + | 176591 | 0.7 | 0.740234 |
Target: 5'- gCAGCGGCugacggugaacGUGGcucGCUGCGugUuuGCGCGUa -3' miRNA: 3'- -GUCGCCG-----------CAUC---UGGCGCugA--UGCGCG- -5' |
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29970 | 3' | -57.6 | NC_006273.1 | + | 71867 | 0.71 | 0.730893 |
Target: 5'- gCAGCuGGUGUuucGACUGCGGCggcaACGgGCg -3' miRNA: 3'- -GUCG-CCGCAu--CUGGCGCUGa---UGCgCG- -5' |
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29970 | 3' | -57.6 | NC_006273.1 | + | 131478 | 0.71 | 0.721474 |
Target: 5'- -cGUGGCGUAcGCCGUG---GCGCGCa -3' miRNA: 3'- guCGCCGCAUcUGGCGCugaUGCGCG- -5' |
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29970 | 3' | -57.6 | NC_006273.1 | + | 153593 | 0.71 | 0.711985 |
Target: 5'- gCGGCGGCGU-GACCGgCGG-UGCGguCGCg -3' miRNA: 3'- -GUCGCCGCAuCUGGC-GCUgAUGC--GCG- -5' |
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29970 | 3' | -57.6 | NC_006273.1 | + | 85791 | 0.72 | 0.6345 |
Target: 5'- gCAGCGGCaucUAGACCGCcgccACU-CGCGUg -3' miRNA: 3'- -GUCGCCGc--AUCUGGCGc---UGAuGCGCG- -5' |
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29970 | 3' | -57.6 | NC_006273.1 | + | 81597 | 0.73 | 0.614966 |
Target: 5'- aGGCGGCGgccgcGGCCGCGGCggagGCcgaagcggccuuGCGCu -3' miRNA: 3'- gUCGCCGCau---CUGGCGCUGa---UG------------CGCG- -5' |
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29970 | 3' | -57.6 | NC_006273.1 | + | 87130 | 0.73 | 0.585769 |
Target: 5'- uCGuaGGCGUAGuaACCGCGACgcaauuuuuUAUGCGCg -3' miRNA: 3'- -GUcgCCGCAUC--UGGCGCUG---------AUGCGCG- -5' |
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29970 | 3' | -57.6 | NC_006273.1 | + | 120770 | 0.74 | 0.528347 |
Target: 5'- gUAGCGGCgGUGGGCacaGCGGCUACGaUGg -3' miRNA: 3'- -GUCGCCG-CAUCUGg--CGCUGAUGC-GCg -5' |
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29970 | 3' | -57.6 | NC_006273.1 | + | 80386 | 0.75 | 0.50965 |
Target: 5'- gAGCGGCGgccguGGCgGCGGCaGCgGCGCa -3' miRNA: 3'- gUCGCCGCau---CUGgCGCUGaUG-CGCG- -5' |
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29970 | 3' | -57.6 | NC_006273.1 | + | 115506 | 0.76 | 0.455379 |
Target: 5'- gCGGCGGCGaagaaaaucGGCCGCGAauggaaGCGCGCg -3' miRNA: 3'- -GUCGCCGCau-------CUGGCGCUga----UGCGCG- -5' |
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29970 | 3' | -57.6 | NC_006273.1 | + | 90316 | 0.78 | 0.335018 |
Target: 5'- cCAGCGGCGUcGcCCGCGGCUAggccgagacuCGCGUu -3' miRNA: 3'- -GUCGCCGCAuCuGGCGCUGAU----------GCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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