miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29970 5' -56.3 NC_006273.1 + 159874 0.66 0.963182
Target:  5'- cGGCcaguucugcaUCUagGUCGcAGGCGGCCGaagcgCCGg -3'
miRNA:   3'- aCCG----------AGA--CAGC-UCCGCUGGCaaa--GGC- -5'
29970 5' -56.3 NC_006273.1 + 187160 0.66 0.963182
Target:  5'- cGGCaugCUGUCGGGucccuggaaGCGugUGUgggCCGg -3'
miRNA:   3'- aCCGa--GACAGCUC---------CGCugGCAaa-GGC- -5'
29970 5' -56.3 NC_006273.1 + 33470 0.66 0.95982
Target:  5'- cGGUuuUCUGUUGAuGUGugCGUUgCCGa -3'
miRNA:   3'- aCCG--AGACAGCUcCGCugGCAAaGGC- -5'
29970 5' -56.3 NC_006273.1 + 111279 0.66 0.956253
Target:  5'- cGaGCUCUGUCGAcGCcGCCGcucacUUUCCu -3'
miRNA:   3'- aC-CGAGACAGCUcCGcUGGC-----AAAGGc -5'
29970 5' -56.3 NC_006273.1 + 161672 0.66 0.952476
Target:  5'- aUGGCgCgggGUCGuGGCGGCUGUgUCg- -3'
miRNA:   3'- -ACCGaGa--CAGCuCCGCUGGCAaAGgc -5'
29970 5' -56.3 NC_006273.1 + 81877 0.66 0.952476
Target:  5'- aGGUUCUG-CGcGGCGAucaCCGUgguaCCGg -3'
miRNA:   3'- aCCGAGACaGCuCCGCU---GGCAaa--GGC- -5'
29970 5' -56.3 NC_006273.1 + 155734 0.66 0.952087
Target:  5'- gGGC-CUGUCGcucgagaAGGUGGCCGUggacUuuGg -3'
miRNA:   3'- aCCGaGACAGC-------UCCGCUGGCAa---AggC- -5'
29970 5' -56.3 NC_006273.1 + 18265 0.66 0.947247
Target:  5'- gGGCUCUa-CGAGGUGGCCaGUgauaucaaagccuuUUCCa -3'
miRNA:   3'- aCCGAGAcaGCUCCGCUGG-CA--------------AAGGc -5'
29970 5' -56.3 NC_006273.1 + 94707 0.66 0.94428
Target:  5'- aGGCUCguuccgCGguGGGCGACCGgggaUCCc -3'
miRNA:   3'- aCCGAGaca---GC--UCCGCUGGCaa--AGGc -5'
29970 5' -56.3 NC_006273.1 + 4448 0.67 0.930345
Target:  5'- gGGCUCUccaUCGGGaGCGguACCGUUUUCc -3'
miRNA:   3'- aCCGAGAc--AGCUC-CGC--UGGCAAAGGc -5'
29970 5' -56.3 NC_006273.1 + 171069 0.67 0.925257
Target:  5'- cGGCg--GUUGGGGCG-CCGaUUCCc -3'
miRNA:   3'- aCCGagaCAGCUCCGCuGGCaAAGGc -5'
29970 5' -56.3 NC_006273.1 + 187296 0.67 0.919946
Target:  5'- cGGCgucgUUGcCGGGGCGGCUGcuccaggUCCGc -3'
miRNA:   3'- aCCGa---GACaGCUCCGCUGGCaa-----AGGC- -5'
29970 5' -56.3 NC_006273.1 + 228536 0.68 0.908662
Target:  5'- -uGCUCUGUCuggaacguuGAGGCGcgACCcUUUCCGu -3'
miRNA:   3'- acCGAGACAG---------CUCCGC--UGGcAAAGGC- -5'
29970 5' -56.3 NC_006273.1 + 57446 0.69 0.862421
Target:  5'- cGGCUgUGUCGGGuGUGGCUGUcuguuugUCUGu -3'
miRNA:   3'- aCCGAgACAGCUC-CGCUGGCAa------AGGC- -5'
29970 5' -56.3 NC_006273.1 + 130198 0.69 0.862421
Target:  5'- aGGC-CgacaCGGcGGCGACCGUUUCCc -3'
miRNA:   3'- aCCGaGaca-GCU-CCGCUGGCAAAGGc -5'
29970 5' -56.3 NC_006273.1 + 119377 0.7 0.823534
Target:  5'- cGGggCUGgacuUUGAGGCGGCCGUgUUCGa -3'
miRNA:   3'- aCCgaGAC----AGCUCCGCUGGCAaAGGC- -5'
29970 5' -56.3 NC_006273.1 + 40485 0.72 0.705955
Target:  5'- cGGCgugGUCGAGGCGGCCcGgcugcugCCGg -3'
miRNA:   3'- aCCGagaCAGCUCCGCUGG-Caaa----GGC- -5'
29970 5' -56.3 NC_006273.1 + 96131 0.79 0.357095
Target:  5'- gGGCgCUGUCGAGGCGACUcuuccuGUUUUCGc -3'
miRNA:   3'- aCCGaGACAGCUCCGCUGG------CAAAGGC- -5'
29970 5' -56.3 NC_006273.1 + 17009 1.08 0.005565
Target:  5'- cUGGCUCUGUCGAGGCGACCGUUUCCGc -3'
miRNA:   3'- -ACCGAGACAGCUCCGCUGGCAAAGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.