miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29972 5' -60.5 NC_006273.1 + 133751 0.66 0.812701
Target:  5'- uAGCGaCGgcgGCCauGGAGCUGCacucacGCGGCCGu -3'
miRNA:   3'- -UCGUgGUa--CGG--CCUCGACG------CGCUGGU- -5'
29972 5' -60.5 NC_006273.1 + 197324 0.66 0.812701
Target:  5'- cGGCugC-UGCCcGAGCUGgacCGCGAgCAg -3'
miRNA:   3'- -UCGugGuACGGcCUCGAC---GCGCUgGU- -5'
29972 5' -60.5 NC_006273.1 + 177046 0.66 0.812701
Target:  5'- cAGCGCgc-GCUGGGaagcGCUGCGCG-CCGa -3'
miRNA:   3'- -UCGUGguaCGGCCU----CGACGCGCuGGU- -5'
29972 5' -60.5 NC_006273.1 + 2431 0.66 0.812701
Target:  5'- cGGCugC-UGCCcGAGCUGgacCGCGAgCAg -3'
miRNA:   3'- -UCGugGuACGGcCUCGAC---GCGCUgGU- -5'
29972 5' -60.5 NC_006273.1 + 214757 0.66 0.807678
Target:  5'- gAGCACCguggGUGCCGGcGGUaugaucgccaguucuUGCGCuucGGCCGc -3'
miRNA:   3'- -UCGUGG----UACGGCC-UCG---------------ACGCG---CUGGU- -5'
29972 5' -60.5 NC_006273.1 + 163656 0.66 0.804301
Target:  5'- cGGCGCCccGCUGuGucaGGCUGCGCG-CUg -3'
miRNA:   3'- -UCGUGGuaCGGC-C---UCGACGCGCuGGu -5'
29972 5' -60.5 NC_006273.1 + 183784 0.66 0.804301
Target:  5'- cGC-CCGUGUCGGAagaagaccccGCUGCcGCcGCCAc -3'
miRNA:   3'- uCGuGGUACGGCCU----------CGACG-CGcUGGU- -5'
29972 5' -60.5 NC_006273.1 + 40504 0.66 0.804301
Target:  5'- cGGCugC-UGCCGGAcagGCgacccgGCGCGcuACCGc -3'
miRNA:   3'- -UCGugGuACGGCCU---CGa-----CGCGC--UGGU- -5'
29972 5' -60.5 NC_006273.1 + 56530 0.66 0.804301
Target:  5'- aAGUAau-UGCCGGAGUUGCGau-CCAa -3'
miRNA:   3'- -UCGUgguACGGCCUCGACGCgcuGGU- -5'
29972 5' -60.5 NC_006273.1 + 165124 0.66 0.795759
Target:  5'- aAGCACCG-GCUcuccgguggGGAGCUGCgguuGCGugUAc -3'
miRNA:   3'- -UCGUGGUaCGG---------CCUCGACG----CGCugGU- -5'
29972 5' -60.5 NC_006273.1 + 2144 0.66 0.795759
Target:  5'- cGCACgCGgugGUCGGGGCgGaCGCGACg- -3'
miRNA:   3'- uCGUG-GUa--CGGCCUCGaC-GCGCUGgu -5'
29972 5' -60.5 NC_006273.1 + 115841 0.66 0.795759
Target:  5'- cGCAUCGcGCCGaGGUggugGCGCGACaCAa -3'
miRNA:   3'- uCGUGGUaCGGCcUCGa---CGCGCUG-GU- -5'
29972 5' -60.5 NC_006273.1 + 45543 0.66 0.795759
Target:  5'- -cCGCCAUGCCGcaGAuGCcacccgGCGUGGCCGa -3'
miRNA:   3'- ucGUGGUACGGC--CU-CGa-----CGCGCUGGU- -5'
29972 5' -60.5 NC_006273.1 + 118458 0.66 0.795759
Target:  5'- cGGcCGCCGUGagguCUGGAaaccGCUGUGUGACCc -3'
miRNA:   3'- -UC-GUGGUAC----GGCCU----CGACGCGCUGGu -5'
29972 5' -60.5 NC_006273.1 + 95513 0.66 0.795759
Target:  5'- --aAUCGgcgGCCGGAGaCUGCGCcgacagcucGACCAu -3'
miRNA:   3'- ucgUGGUa--CGGCCUC-GACGCG---------CUGGU- -5'
29972 5' -60.5 NC_006273.1 + 197037 0.66 0.795759
Target:  5'- cGCACgCGgugGUCGGGGCgGaCGCGACg- -3'
miRNA:   3'- uCGUG-GUa--CGGCCUCGaC-GCGCUGgu -5'
29972 5' -60.5 NC_006273.1 + 212672 0.66 0.79317
Target:  5'- cGCuCCAUGCCGGcGCcugacgguccuuugUGCGCGcuccCCAu -3'
miRNA:   3'- uCGuGGUACGGCCuCG--------------ACGCGCu---GGU- -5'
29972 5' -60.5 NC_006273.1 + 158857 0.66 0.787083
Target:  5'- uGCGCCGcGCC-GAGCgGCGaCGugCAu -3'
miRNA:   3'- uCGUGGUaCGGcCUCGaCGC-GCugGU- -5'
29972 5' -60.5 NC_006273.1 + 190453 0.66 0.787083
Target:  5'- cGUACCGUGCCGaGAcagaaGUUGCGCcgGACg- -3'
miRNA:   3'- uCGUGGUACGGC-CU-----CGACGCG--CUGgu -5'
29972 5' -60.5 NC_006273.1 + 170341 0.66 0.787083
Target:  5'- cGGCGuuGUGacauuccgCGGAGCUGUGCgGAUCAa -3'
miRNA:   3'- -UCGUggUACg-------GCCUCGACGCG-CUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.