Results 1 - 20 of 123 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29972 | 5' | -60.5 | NC_006273.1 | + | 192159 | 0.66 | 0.769358 |
Target: 5'- aAGCGCCGUaGCCGGcccGcCUGC-CGAUCGc -3' miRNA: 3'- -UCGUGGUA-CGGCCu--C-GACGcGCUGGU- -5' |
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29972 | 5' | -60.5 | NC_006273.1 | + | 198091 | 0.66 | 0.787083 |
Target: 5'- cGGCAugUCcgGCCGucgcaaGGGCUGCucgGCGGCCAc -3' miRNA: 3'- -UCGU--GGuaCGGC------CUCGACG---CGCUGGU- -5' |
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29972 | 5' | -60.5 | NC_006273.1 | + | 147970 | 0.66 | 0.769358 |
Target: 5'- uAGCGCCGUGuuGGcGC-GCGUGuuGCUAg -3' miRNA: 3'- -UCGUGGUACggCCuCGaCGCGC--UGGU- -5' |
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29972 | 5' | -60.5 | NC_006273.1 | + | 43146 | 0.66 | 0.769358 |
Target: 5'- cAGCACCGUacGCCGGuGCagGCGUuuuucGCCGc -3' miRNA: 3'- -UCGUGGUA--CGGCCuCGa-CGCGc----UGGU- -5' |
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29972 | 5' | -60.5 | NC_006273.1 | + | 31022 | 0.66 | 0.77828 |
Target: 5'- cGGCACCugggGUaacGAGCggaGCGCGACCc -3' miRNA: 3'- -UCGUGGua--CGgc-CUCGa--CGCGCUGGu -5' |
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29972 | 5' | -60.5 | NC_006273.1 | + | 33231 | 0.66 | 0.77828 |
Target: 5'- cGCACCGaggGCCccGGGGCgGCGaCGACg- -3' miRNA: 3'- uCGUGGUa--CGG--CCUCGaCGC-GCUGgu -5' |
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29972 | 5' | -60.5 | NC_006273.1 | + | 45531 | 0.66 | 0.77828 |
Target: 5'- gAGCACCAggacaagGUgGuGAGCUacgcGCGCGACgAg -3' miRNA: 3'- -UCGUGGUa------CGgC-CUCGA----CGCGCUGgU- -5' |
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29972 | 5' | -60.5 | NC_006273.1 | + | 141341 | 0.66 | 0.787083 |
Target: 5'- cGCACaCcUGuuGGAGCaacGgGCGGCCGu -3' miRNA: 3'- uCGUG-GuACggCCUCGa--CgCGCUGGU- -5' |
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29972 | 5' | -60.5 | NC_006273.1 | + | 197037 | 0.66 | 0.795759 |
Target: 5'- cGCACgCGgugGUCGGGGCgGaCGCGACg- -3' miRNA: 3'- uCGUG-GUa--CGGCCUCGaC-GCGCUGgu -5' |
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29972 | 5' | -60.5 | NC_006273.1 | + | 177046 | 0.66 | 0.812701 |
Target: 5'- cAGCGCgc-GCUGGGaagcGCUGCGCG-CCGa -3' miRNA: 3'- -UCGUGguaCGGCCU----CGACGCGCuGGU- -5' |
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29972 | 5' | -60.5 | NC_006273.1 | + | 193847 | 0.66 | 0.76846 |
Target: 5'- cGGCGCCGgaguuaacguuccUGCUGGcGCcgGCGCuGCCAu -3' miRNA: 3'- -UCGUGGU-------------ACGGCCuCGa-CGCGcUGGU- -5' |
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29972 | 5' | -60.5 | NC_006273.1 | + | 91176 | 0.66 | 0.769358 |
Target: 5'- gAGcCGCCGUGCCGGucgucGCaccGCuCGGCCAc -3' miRNA: 3'- -UC-GUGGUACGGCCu----CGa--CGcGCUGGU- -5' |
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29972 | 5' | -60.5 | NC_006273.1 | + | 56530 | 0.66 | 0.804301 |
Target: 5'- aAGUAau-UGCCGGAGUUGCGau-CCAa -3' miRNA: 3'- -UCGUgguACGGCCUCGACGCgcuGGU- -5' |
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29972 | 5' | -60.5 | NC_006273.1 | + | 170341 | 0.66 | 0.787083 |
Target: 5'- cGGCGuuGUGacauuccgCGGAGCUGUGCgGAUCAa -3' miRNA: 3'- -UCGUggUACg-------GCCUCGACGCG-CUGGU- -5' |
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29972 | 5' | -60.5 | NC_006273.1 | + | 164555 | 0.66 | 0.769358 |
Target: 5'- aGGUACCggcgGUGuuGGAGCgGCGCcaGACgCAg -3' miRNA: 3'- -UCGUGG----UACggCCUCGaCGCG--CUG-GU- -5' |
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29972 | 5' | -60.5 | NC_006273.1 | + | 190037 | 0.66 | 0.77828 |
Target: 5'- gGGguCCAguucgGCCGGcgcgcgcuugAGCUGUGCGAUg- -3' miRNA: 3'- -UCguGGUa----CGGCC----------UCGACGCGCUGgu -5' |
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29972 | 5' | -60.5 | NC_006273.1 | + | 145396 | 0.66 | 0.781816 |
Target: 5'- cGCACCcgcuugcccgugGUGCCcaagcagcccaagaaGGAGCccUGCGUGAUCAc -3' miRNA: 3'- uCGUGG------------UACGG---------------CCUCG--ACGCGCUGGU- -5' |
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29972 | 5' | -60.5 | NC_006273.1 | + | 197324 | 0.66 | 0.812701 |
Target: 5'- cGGCugC-UGCCcGAGCUGgacCGCGAgCAg -3' miRNA: 3'- -UCGugGuACGGcCUCGAC---GCGCUgGU- -5' |
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29972 | 5' | -60.5 | NC_006273.1 | + | 161635 | 0.66 | 0.77828 |
Target: 5'- cGGCGCCGcUGCCGGgccucGGCcGCcGCcGCCAc -3' miRNA: 3'- -UCGUGGU-ACGGCC-----UCGaCG-CGcUGGU- -5' |
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29972 | 5' | -60.5 | NC_006273.1 | + | 213457 | 0.66 | 0.769358 |
Target: 5'- uAGCGCCGucuacccgaUGCCGGcGGCUGCaguuguuguccGCGAUg- -3' miRNA: 3'- -UCGUGGU---------ACGGCC-UCGACG-----------CGCUGgu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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