miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29972 5' -60.5 NC_006273.1 + 16137 1.08 0.001875
Target:  5'- cAGCACCAUGCCGGAGCUGCGCGACCAa -3'
miRNA:   3'- -UCGUGGUACGGCCUCGACGCGCUGGU- -5'
29972 5' -60.5 NC_006273.1 + 2260 0.74 0.377231
Target:  5'- cGCGCCAUGCUGGugguggugcuggacgAGCUGgGCG-CCGu -3'
miRNA:   3'- uCGUGGUACGGCC---------------UCGACgCGCuGGU- -5'
29972 5' -60.5 NC_006273.1 + 197153 0.74 0.377231
Target:  5'- cGCGCCAUGCUGGugguggugcuggacgAGCUGgGCG-CCGu -3'
miRNA:   3'- uCGUGGUACGGCC---------------UCGACgCGCuGGU- -5'
29972 5' -60.5 NC_006273.1 + 94370 0.73 0.397949
Target:  5'- gAGCACCAUccggggccguggGCCGG-GCaccggGCGCGGCCc -3'
miRNA:   3'- -UCGUGGUA------------CGGCCuCGa----CGCGCUGGu -5'
29972 5' -60.5 NC_006273.1 + 141755 0.72 0.431208
Target:  5'- cGGCGCCAguggaUGCgCGaAGCUGCGCaGGCCGc -3'
miRNA:   3'- -UCGUGGU-----ACG-GCcUCGACGCG-CUGGU- -5'
29972 5' -60.5 NC_006273.1 + 51987 0.72 0.431208
Target:  5'- uGGCACCGUGCCaGAacugcgccauGCUGgGCG-CCAg -3'
miRNA:   3'- -UCGUGGUACGGcCU----------CGACgCGCuGGU- -5'
29972 5' -60.5 NC_006273.1 + 196614 0.72 0.439775
Target:  5'- cGGCGCUcgGaCgGGAGCUGCGCcggcggugGGCCGg -3'
miRNA:   3'- -UCGUGGuaC-GgCCUCGACGCG--------CUGGU- -5'
29972 5' -60.5 NC_006273.1 + 201951 0.72 0.439775
Target:  5'- aAGCugC--GCCGGGGCUGuCGCGcGCCGc -3'
miRNA:   3'- -UCGugGuaCGGCCUCGAC-GCGC-UGGU- -5'
29972 5' -60.5 NC_006273.1 + 1722 0.72 0.439775
Target:  5'- cGGCGCUcgGaCgGGAGCUGCGCcggcggugGGCCGg -3'
miRNA:   3'- -UCGUGGuaC-GgCCUCGACGCG--------CUGGU- -5'
29972 5' -60.5 NC_006273.1 + 129488 0.72 0.448437
Target:  5'- gAGCGCgAggcGUCGGAGCUcggggaaagcaGCGCGACCc -3'
miRNA:   3'- -UCGUGgUa--CGGCCUCGA-----------CGCGCUGGu -5'
29972 5' -60.5 NC_006273.1 + 82395 0.72 0.46604
Target:  5'- cGGCcagAgCAUGCaccaGGuGCUGCGCGACCc -3'
miRNA:   3'- -UCG---UgGUACGg---CCuCGACGCGCUGGu -5'
29972 5' -60.5 NC_006273.1 + 55964 0.72 0.474975
Target:  5'- cAGCACCGUGCC---GCUGaCGCGACgAa -3'
miRNA:   3'- -UCGUGGUACGGccuCGAC-GCGCUGgU- -5'
29972 5' -60.5 NC_006273.1 + 44894 0.71 0.520849
Target:  5'- -aCGCCAcGUCGGAGCccUGCGCG-CCAc -3'
miRNA:   3'- ucGUGGUaCGGCCUCG--ACGCGCuGGU- -5'
29972 5' -60.5 NC_006273.1 + 70106 0.7 0.539686
Target:  5'- cAGCGCCGcGCUGGAuGacggugaUGCGCGGCUAc -3'
miRNA:   3'- -UCGUGGUaCGGCCU-Cg------ACGCGCUGGU- -5'
29972 5' -60.5 NC_006273.1 + 132097 0.7 0.549191
Target:  5'- uGGCACCGcUGCUGGAGCgacCGCuGCCc -3'
miRNA:   3'- -UCGUGGU-ACGGCCUCGac-GCGcUGGu -5'
29972 5' -60.5 NC_006273.1 + 87501 0.7 0.567389
Target:  5'- gGGCGCCGacgcgaaUGUCGGAGUUugccaGCGCGGCg- -3'
miRNA:   3'- -UCGUGGU-------ACGGCCUCGA-----CGCGCUGgu -5'
29972 5' -60.5 NC_006273.1 + 168616 0.7 0.567389
Target:  5'- cAGCGCCGaGCCGcGGCUGCccgggucGCGcACCAg -3'
miRNA:   3'- -UCGUGGUaCGGCcUCGACG-------CGC-UGGU- -5'
29972 5' -60.5 NC_006273.1 + 199517 0.7 0.568351
Target:  5'- cGGCAUCAUGCUGGgcgacacucAGUacuuugggguggUGCGCGAUCAc -3'
miRNA:   3'- -UCGUGGUACGGCC---------UCG------------ACGCGCUGGU- -5'
29972 5' -60.5 NC_006273.1 + 31676 0.7 0.568351
Target:  5'- cAGCACCAgcUGCagagcaucuCGGAGCUGUGUuACCu -3'
miRNA:   3'- -UCGUGGU--ACG---------GCCUCGACGCGcUGGu -5'
29972 5' -60.5 NC_006273.1 + 81143 0.7 0.577995
Target:  5'- gGGUugCGga-UGGAGCUGgGCGGCCGc -3'
miRNA:   3'- -UCGugGUacgGCCUCGACgCGCUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.