miRNA display CGI


Results 21 - 40 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29972 5' -60.5 NC_006273.1 + 158857 0.66 0.787083
Target:  5'- uGCGCCGcGCC-GAGCgGCGaCGugCAu -3'
miRNA:   3'- uCGUGGUaCGGcCUCGaCGC-GCugGU- -5'
29972 5' -60.5 NC_006273.1 + 190453 0.66 0.787083
Target:  5'- cGUACCGUGCCGaGAcagaaGUUGCGCcgGACg- -3'
miRNA:   3'- uCGUGGUACGGC-CU-----CGACGCG--CUGgu -5'
29972 5' -60.5 NC_006273.1 + 145396 0.66 0.781816
Target:  5'- cGCACCcgcuugcccgugGUGCCcaagcagcccaagaaGGAGCccUGCGUGAUCAc -3'
miRNA:   3'- uCGUGG------------UACGG---------------CCUCG--ACGCGCUGGU- -5'
29972 5' -60.5 NC_006273.1 + 45531 0.66 0.77828
Target:  5'- gAGCACCAggacaagGUgGuGAGCUacgcGCGCGACgAg -3'
miRNA:   3'- -UCGUGGUa------CGgC-CUCGA----CGCGCUGgU- -5'
29972 5' -60.5 NC_006273.1 + 33231 0.66 0.77828
Target:  5'- cGCACCGaggGCCccGGGGCgGCGaCGACg- -3'
miRNA:   3'- uCGUGGUa--CGG--CCUCGaCGC-GCUGgu -5'
29972 5' -60.5 NC_006273.1 + 161635 0.66 0.77828
Target:  5'- cGGCGCCGcUGCCGGgccucGGCcGCcGCcGCCAc -3'
miRNA:   3'- -UCGUGGU-ACGGCC-----UCGaCG-CGcUGGU- -5'
29972 5' -60.5 NC_006273.1 + 190037 0.66 0.77828
Target:  5'- gGGguCCAguucgGCCGGcgcgcgcuugAGCUGUGCGAUg- -3'
miRNA:   3'- -UCguGGUa----CGGCC----------UCGACGCGCUGgu -5'
29972 5' -60.5 NC_006273.1 + 31022 0.66 0.77828
Target:  5'- cGGCACCugggGUaacGAGCggaGCGCGACCc -3'
miRNA:   3'- -UCGUGGua--CGgc-CUCGa--CGCGCUGGu -5'
29972 5' -60.5 NC_006273.1 + 147970 0.66 0.769358
Target:  5'- uAGCGCCGUGuuGGcGC-GCGUGuuGCUAg -3'
miRNA:   3'- -UCGUGGUACggCCuCGaCGCGC--UGGU- -5'
29972 5' -60.5 NC_006273.1 + 164555 0.66 0.769358
Target:  5'- aGGUACCggcgGUGuuGGAGCgGCGCcaGACgCAg -3'
miRNA:   3'- -UCGUGG----UACggCCUCGaCGCG--CUG-GU- -5'
29972 5' -60.5 NC_006273.1 + 192159 0.66 0.769358
Target:  5'- aAGCGCCGUaGCCGGcccGcCUGC-CGAUCGc -3'
miRNA:   3'- -UCGUGGUA-CGGCCu--C-GACGcGCUGGU- -5'
29972 5' -60.5 NC_006273.1 + 213457 0.66 0.769358
Target:  5'- uAGCGCCGucuacccgaUGCCGGcGGCUGCaguuguuguccGCGAUg- -3'
miRNA:   3'- -UCGUGGU---------ACGGCC-UCGACG-----------CGCUGgu -5'
29972 5' -60.5 NC_006273.1 + 43146 0.66 0.769358
Target:  5'- cAGCACCGUacGCCGGuGCagGCGUuuuucGCCGc -3'
miRNA:   3'- -UCGUGGUA--CGGCCuCGa-CGCGc----UGGU- -5'
29972 5' -60.5 NC_006273.1 + 91176 0.66 0.769358
Target:  5'- gAGcCGCCGUGCCGGucgucGCaccGCuCGGCCAc -3'
miRNA:   3'- -UC-GUGGUACGGCCu----CGa--CGcGCUGGU- -5'
29972 5' -60.5 NC_006273.1 + 193847 0.66 0.76846
Target:  5'- cGGCGCCGgaguuaacguuccUGCUGGcGCcgGCGCuGCCAu -3'
miRNA:   3'- -UCGUGGU-------------ACGGCCuCGa-CGCGcUGGU- -5'
29972 5' -60.5 NC_006273.1 + 67030 0.67 0.760325
Target:  5'- cAGCACCGUGCaucuGCaucaGgGCGACCAg -3'
miRNA:   3'- -UCGUGGUACGgccuCGa---CgCGCUGGU- -5'
29972 5' -60.5 NC_006273.1 + 110265 0.67 0.760325
Target:  5'- gGGCGCCGgccucuucuUGUCGG-GCUGCuGCGAaCAg -3'
miRNA:   3'- -UCGUGGU---------ACGGCCuCGACG-CGCUgGU- -5'
29972 5' -60.5 NC_006273.1 + 24093 0.67 0.760325
Target:  5'- cGCGCCA--CCGGGGCcaccaaCGCGGCCu -3'
miRNA:   3'- uCGUGGUacGGCCUCGac----GCGCUGGu -5'
29972 5' -60.5 NC_006273.1 + 141258 0.67 0.760325
Target:  5'- cGCGacCCAUGCCcggcacGGGGCUcgcgcucccuagGUGCGGCCGc -3'
miRNA:   3'- uCGU--GGUACGG------CCUCGA------------CGCGCUGGU- -5'
29972 5' -60.5 NC_006273.1 + 173219 0.67 0.760325
Target:  5'- cGCGCCuccguggcaGCCGuuuccAGCUGCGUGAUCAc -3'
miRNA:   3'- uCGUGGua-------CGGCc----UCGACGCGCUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.