miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29972 5' -60.5 NC_006273.1 + 11 0.68 0.675336
Target:  5'- cGCACCGgcggcgGUCGGGGUgugucggggGCGCGGCgGg -3'
miRNA:   3'- uCGUGGUa-----CGGCCUCGa--------CGCGCUGgU- -5'
29972 5' -60.5 NC_006273.1 + 1250 0.67 0.713769
Target:  5'- cGCGCCAUGCgcaagUGGucGCaGCGCGACgCGg -3'
miRNA:   3'- uCGUGGUACG-----GCCu-CGaCGCGCUG-GU- -5'
29972 5' -60.5 NC_006273.1 + 1722 0.72 0.439775
Target:  5'- cGGCGCUcgGaCgGGAGCUGCGCcggcggugGGCCGg -3'
miRNA:   3'- -UCGUGGuaC-GgCCUCGACGCG--------CUGGU- -5'
29972 5' -60.5 NC_006273.1 + 1933 0.69 0.613937
Target:  5'- gGGCGCgGUGCUGcccgcgcgguggcuGGGUUGCGCGGCgGg -3'
miRNA:   3'- -UCGUGgUACGGC--------------CUCGACGCGCUGgU- -5'
29972 5' -60.5 NC_006273.1 + 2103 0.69 0.607114
Target:  5'- aGGCGCCG-GCgGGAGCgcgauuUGCGUG-CCAa -3'
miRNA:   3'- -UCGUGGUaCGgCCUCG------ACGCGCuGGU- -5'
29972 5' -60.5 NC_006273.1 + 2144 0.66 0.795759
Target:  5'- cGCACgCGgugGUCGGGGCgGaCGCGACg- -3'
miRNA:   3'- uCGUG-GUa--CGGCCUCGaC-GCGCUGgu -5'
29972 5' -60.5 NC_006273.1 + 2260 0.74 0.377231
Target:  5'- cGCGCCAUGCUGGugguggugcuggacgAGCUGgGCG-CCGu -3'
miRNA:   3'- uCGUGGUACGGCC---------------UCGACgCGCuGGU- -5'
29972 5' -60.5 NC_006273.1 + 2405 0.67 0.732637
Target:  5'- cGGCGCCcgccGCCGaGGCcGCGCGGCg- -3'
miRNA:   3'- -UCGUGGua--CGGCcUCGaCGCGCUGgu -5'
29972 5' -60.5 NC_006273.1 + 2431 0.66 0.812701
Target:  5'- cGGCugC-UGCCcGAGCUGgacCGCGAgCAg -3'
miRNA:   3'- -UCGugGuACGGcCUCGAC---GCGCUgGU- -5'
29972 5' -60.5 NC_006273.1 + 2500 0.69 0.626622
Target:  5'- cGCGCCGcGCUGuGGGC-GCGCGAgCCGc -3'
miRNA:   3'- uCGUGGUaCGGC-CUCGaCGCGCU-GGU- -5'
29972 5' -60.5 NC_006273.1 + 14346 0.67 0.723239
Target:  5'- cGCugCAguugugccGCCGGAGCUccccGCGCuGCCu -3'
miRNA:   3'- uCGugGUa-------CGGCCUCGA----CGCGcUGGu -5'
29972 5' -60.5 NC_006273.1 + 16137 1.08 0.001875
Target:  5'- cAGCACCAUGCCGGAGCUGCGCGACCAa -3'
miRNA:   3'- -UCGUGGUACGGCCUCGACGCGCUGGU- -5'
29972 5' -60.5 NC_006273.1 + 17175 0.68 0.655895
Target:  5'- cGCGCCAUGCCGGucGUccGCcGuCGGCCGc -3'
miRNA:   3'- uCGUGGUACGGCCu-CGa-CG-C-GCUGGU- -5'
29972 5' -60.5 NC_006273.1 + 19827 0.67 0.751188
Target:  5'- cGCACCG-GCUGGAGCaGCucuuuuccaGCGugCGu -3'
miRNA:   3'- uCGUGGUaCGGCCUCGaCG---------CGCugGU- -5'
29972 5' -60.5 NC_006273.1 + 24093 0.67 0.760325
Target:  5'- cGCGCCA--CCGGGGCcaccaaCGCGGCCu -3'
miRNA:   3'- uCGUGGUacGGCCUCGac----GCGCUGGu -5'
29972 5' -60.5 NC_006273.1 + 28024 0.67 0.741956
Target:  5'- --gGCUAUGCgGGAuGCUgcggcgGCGCGACCu -3'
miRNA:   3'- ucgUGGUACGgCCU-CGA------CGCGCUGGu -5'
29972 5' -60.5 NC_006273.1 + 31022 0.66 0.77828
Target:  5'- cGGCACCugggGUaacGAGCggaGCGCGACCc -3'
miRNA:   3'- -UCGUGGua--CGgc-CUCGa--CGCGCUGGu -5'
29972 5' -60.5 NC_006273.1 + 31676 0.7 0.568351
Target:  5'- cAGCACCAgcUGCagagcaucuCGGAGCUGUGUuACCu -3'
miRNA:   3'- -UCGUGGU--ACG---------GCCUCGACGCGcUGGu -5'
29972 5' -60.5 NC_006273.1 + 33231 0.66 0.77828
Target:  5'- cGCACCGaggGCCccGGGGCgGCGaCGACg- -3'
miRNA:   3'- uCGUGGUa--CGG--CCUCGaCGC-GCUGgu -5'
29972 5' -60.5 NC_006273.1 + 35883 0.68 0.655895
Target:  5'- cAGCAUgAUGCCGu-GCaGCGgCGGCCAg -3'
miRNA:   3'- -UCGUGgUACGGCcuCGaCGC-GCUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.