miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29972 5' -60.5 NC_006273.1 + 116777 0.68 0.685011
Target:  5'- cGCucuCCA-GCCGGcGCUGCGaCGACg- -3'
miRNA:   3'- uCGu--GGUaCGGCCuCGACGC-GCUGgu -5'
29972 5' -60.5 NC_006273.1 + 196825 0.69 0.613937
Target:  5'- gGGCGCgGUGCUGcccgcgcgguggcuGGGUUGCGCGGCgGg -3'
miRNA:   3'- -UCGUGgUACGGC--------------CUCGACGCGCUGgU- -5'
29972 5' -60.5 NC_006273.1 + 197393 0.69 0.626622
Target:  5'- cGCGCCGcGCUGuGGGC-GCGCGAgCCGc -3'
miRNA:   3'- uCGUGGUaCGGC-CUCGaCGCGCU-GGU- -5'
29972 5' -60.5 NC_006273.1 + 120728 0.69 0.64029
Target:  5'- gGGCACCAgguugcgggccaggaUGCCGGccGCcaGgGCGGCCAg -3'
miRNA:   3'- -UCGUGGU---------------ACGGCCu-CGa-CgCGCUGGU- -5'
29972 5' -60.5 NC_006273.1 + 148303 0.69 0.646145
Target:  5'- cGGCACUcacaaguauGUGCUGGAGC-GCGaCGACgAg -3'
miRNA:   3'- -UCGUGG---------UACGGCCUCGaCGC-GCUGgU- -5'
29972 5' -60.5 NC_006273.1 + 35883 0.68 0.655895
Target:  5'- cAGCAUgAUGCCGu-GCaGCGgCGGCCAg -3'
miRNA:   3'- -UCGUGgUACGGCcuCGaCGC-GCUGGU- -5'
29972 5' -60.5 NC_006273.1 + 39482 0.68 0.655895
Target:  5'- cAGCGCCAacUGCUGG-GCacCGUGGCCAc -3'
miRNA:   3'- -UCGUGGU--ACGGCCuCGacGCGCUGGU- -5'
29972 5' -60.5 NC_006273.1 + 140225 0.68 0.675336
Target:  5'- cGaCACgaCGUGCUGGAGCguuuCGCGGCCGc -3'
miRNA:   3'- uC-GUG--GUACGGCCUCGac--GCGCUGGU- -5'
29972 5' -60.5 NC_006273.1 + 194904 0.68 0.675336
Target:  5'- cGCACCGgcggcgGUCGGGGUgugucggggGCGCGGCgGg -3'
miRNA:   3'- uCGUGGUa-----CGGCCUCGa--------CGCGCUGgU- -5'
29972 5' -60.5 NC_006273.1 + 196996 0.69 0.607114
Target:  5'- aGGCGCCG-GCgGGAGCgcgauuUGCGUG-CCAa -3'
miRNA:   3'- -UCGUGGUaCGgCCUCG------ACGCGCuGGU- -5'
29972 5' -60.5 NC_006273.1 + 104672 0.7 0.587674
Target:  5'- uGCugCA-GCCuagcgaggacguGGAGCUGCGCGAgCu -3'
miRNA:   3'- uCGugGUaCGG------------CCUCGACGCGCUgGu -5'
29972 5' -60.5 NC_006273.1 + 31676 0.7 0.568351
Target:  5'- cAGCACCAgcUGCagagcaucuCGGAGCUGUGUuACCu -3'
miRNA:   3'- -UCGUGGU--ACG---------GCCUCGACGCGcUGGu -5'
29972 5' -60.5 NC_006273.1 + 94370 0.73 0.397949
Target:  5'- gAGCACCAUccggggccguggGCCGG-GCaccggGCGCGGCCc -3'
miRNA:   3'- -UCGUGGUA------------CGGCCuCGa----CGCGCUGGu -5'
29972 5' -60.5 NC_006273.1 + 51987 0.72 0.431208
Target:  5'- uGGCACCGUGCCaGAacugcgccauGCUGgGCG-CCAg -3'
miRNA:   3'- -UCGUGGUACGGcCU----------CGACgCGCuGGU- -5'
29972 5' -60.5 NC_006273.1 + 141755 0.72 0.431208
Target:  5'- cGGCGCCAguggaUGCgCGaAGCUGCGCaGGCCGc -3'
miRNA:   3'- -UCGUGGU-----ACG-GCcUCGACGCG-CUGGU- -5'
29972 5' -60.5 NC_006273.1 + 196614 0.72 0.439775
Target:  5'- cGGCGCUcgGaCgGGAGCUGCGCcggcggugGGCCGg -3'
miRNA:   3'- -UCGUGGuaC-GgCCUCGACGCG--------CUGGU- -5'
29972 5' -60.5 NC_006273.1 + 129488 0.72 0.448437
Target:  5'- gAGCGCgAggcGUCGGAGCUcggggaaagcaGCGCGACCc -3'
miRNA:   3'- -UCGUGgUa--CGGCCUCGA-----------CGCGCUGGu -5'
29972 5' -60.5 NC_006273.1 + 55964 0.72 0.474975
Target:  5'- cAGCACCGUGCC---GCUGaCGCGACgAa -3'
miRNA:   3'- -UCGUGGUACGGccuCGAC-GCGCUGgU- -5'
29972 5' -60.5 NC_006273.1 + 44894 0.71 0.520849
Target:  5'- -aCGCCAcGUCGGAGCccUGCGCG-CCAc -3'
miRNA:   3'- ucGUGGUaCGGCCUCG--ACGCGCuGGU- -5'
29972 5' -60.5 NC_006273.1 + 87501 0.7 0.567389
Target:  5'- gGGCGCCGacgcgaaUGUCGGAGUUugccaGCGCGGCg- -3'
miRNA:   3'- -UCGUGGU-------ACGGCCUCGA-----CGCGCUGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.