miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29974 3' -56.2 NC_006273.1 + 139811 0.66 0.949404
Target:  5'- aGGUCUCcgGGguCCGCCGggGUUu--- -3'
miRNA:   3'- -UCAGAGa-CCguGGCGGCuaCAGucaa -5'
29974 3' -56.2 NC_006273.1 + 82292 0.66 0.940685
Target:  5'- uGUCUUUGGUGCUGCcCGAcGUCAc-- -3'
miRNA:   3'- uCAGAGACCGUGGCG-GCUaCAGUcaa -5'
29974 3' -56.2 NC_006273.1 + 143512 0.66 0.940685
Target:  5'- uGUCUCcugggcgagcaUGGCGCCGCgcUGGUGUCGc-- -3'
miRNA:   3'- uCAGAG-----------ACCGUGGCG--GCUACAGUcaa -5'
29974 3' -56.2 NC_006273.1 + 11725 0.66 0.935983
Target:  5'- gAGUCUUUGa---CGUCGAUGUCAGUc -3'
miRNA:   3'- -UCAGAGACcgugGCGGCUACAGUCAa -5'
29974 3' -56.2 NC_006273.1 + 138702 0.66 0.935983
Target:  5'- cGUgCUCuUGGCGCCGC-GGUGUCGa-- -3'
miRNA:   3'- uCA-GAG-ACCGUGGCGgCUACAGUcaa -5'
29974 3' -56.2 NC_006273.1 + 78688 0.66 0.925886
Target:  5'- gGGUCcgCgGGCACCGCCGccGgaggcgCGGUUc -3'
miRNA:   3'- -UCAGa-GaCCGUGGCGGCuaCa-----GUCAA- -5'
29974 3' -56.2 NC_006273.1 + 14121 0.67 0.92049
Target:  5'- uGUUUCUGcGCACCGguCCGAacgcuagGUCGGUUc -3'
miRNA:   3'- uCAGAGAC-CGUGGC--GGCUa------CAGUCAA- -5'
29974 3' -56.2 NC_006273.1 + 142502 0.67 0.92049
Target:  5'- cGUUggcaUCUGGCACCGCCucuUGggCGGUUc -3'
miRNA:   3'- uCAG----AGACCGUGGCGGcu-ACa-GUCAA- -5'
29974 3' -56.2 NC_006273.1 + 81950 0.67 0.92049
Target:  5'- aAGUCUUgccGGCGcCCGCCG-UGcCGGUg -3'
miRNA:   3'- -UCAGAGa--CCGU-GGCGGCuACaGUCAa -5'
29974 3' -56.2 NC_006273.1 + 123091 0.67 0.92049
Target:  5'- gGGUCggCUGGCGCC-UCGGUG-CGGUc -3'
miRNA:   3'- -UCAGa-GACCGUGGcGGCUACaGUCAa -5'
29974 3' -56.2 NC_006273.1 + 40973 0.67 0.914863
Target:  5'- cGGUUUCUGGC-UCGUgGAUGUCGu-- -3'
miRNA:   3'- -UCAGAGACCGuGGCGgCUACAGUcaa -5'
29974 3' -56.2 NC_006273.1 + 161622 0.67 0.909006
Target:  5'- uGGUCgccgCUGGCGgCGCCGcUGcCGGg- -3'
miRNA:   3'- -UCAGa---GACCGUgGCGGCuACaGUCaa -5'
29974 3' -56.2 NC_006273.1 + 62940 0.67 0.902921
Target:  5'- --aCUUUGGcCACCGCUGGUGcCAGc- -3'
miRNA:   3'- ucaGAGACC-GUGGCGGCUACaGUCaa -5'
29974 3' -56.2 NC_006273.1 + 171164 0.68 0.883322
Target:  5'- aGGUCaUC-GGCGCuagCGCgCGAUGUCGGUg -3'
miRNA:   3'- -UCAG-AGaCCGUG---GCG-GCUACAGUCAa -5'
29974 3' -56.2 NC_006273.1 + 204782 0.68 0.883322
Target:  5'- cGGUUUCUuGGCGgCGCCGGUGccgcCGGUc -3'
miRNA:   3'- -UCAGAGA-CCGUgGCGGCUACa---GUCAa -5'
29974 3' -56.2 NC_006273.1 + 87642 0.68 0.861784
Target:  5'- uGUCgcCUGGUGCUGCUG-UGUCGGUg -3'
miRNA:   3'- uCAGa-GACCGUGGCGGCuACAGUCAa -5'
29974 3' -56.2 NC_006273.1 + 194179 0.68 0.861784
Target:  5'- cGUCUCgGGaCGCCGCUGAUGa-GGUUu -3'
miRNA:   3'- uCAGAGaCC-GUGGCGGCUACagUCAA- -5'
29974 3' -56.2 NC_006273.1 + 28170 0.68 0.854196
Target:  5'- cGUCUCUacGGCACCGUCG-UGUucCAGa- -3'
miRNA:   3'- uCAGAGA--CCGUGGCGGCuACA--GUCaa -5'
29974 3' -56.2 NC_006273.1 + 55176 0.68 0.854196
Target:  5'- cAGuUCUCUGGgACaGCCGGUGgcgCGGUa -3'
miRNA:   3'- -UC-AGAGACCgUGgCGGCUACa--GUCAa -5'
29974 3' -56.2 NC_006273.1 + 156657 0.7 0.787063
Target:  5'- cGGUUUCUGGCguaucuugcGCCGCCug-GUCAGg- -3'
miRNA:   3'- -UCAGAGACCG---------UGGCGGcuaCAGUCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.