miRNA display CGI


Results 1 - 20 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29975 3' -54.9 NC_006273.1 + 75217 0.66 0.97641
Target:  5'- --aGCUGCUAugGCaCGCGCAcCCGcGUCa -3'
miRNA:   3'- cggCGACGAU--UG-GUGCGUuGGCcUAG- -5'
29975 3' -54.9 NC_006273.1 + 151341 0.66 0.97641
Target:  5'- cGCCGCUucgcgGCUcAUUugGCG-CCGGcgCg -3'
miRNA:   3'- -CGGCGA-----CGAuUGGugCGUuGGCCuaG- -5'
29975 3' -54.9 NC_006273.1 + 145087 0.66 0.97641
Target:  5'- cGCCGCUggcggcggcGCUGAUCACcaccugcgggGCAGcCCGGGc- -3'
miRNA:   3'- -CGGCGA---------CGAUUGGUG----------CGUU-GGCCUag -5'
29975 3' -54.9 NC_006273.1 + 143348 0.66 0.97641
Target:  5'- uGCgGCUGUUgGACCgGCGCGGuCUGGAc- -3'
miRNA:   3'- -CGgCGACGA-UUGG-UGCGUU-GGCCUag -5'
29975 3' -54.9 NC_006273.1 + 227285 0.66 0.97641
Target:  5'- cCCGCUGCUuuUCugGCGACgCGuGGc- -3'
miRNA:   3'- cGGCGACGAuuGGugCGUUG-GC-CUag -5'
29975 3' -54.9 NC_006273.1 + 154553 0.66 0.97641
Target:  5'- aGgCGCUGC--GCCcCGCGGCCGacGUCg -3'
miRNA:   3'- -CgGCGACGauUGGuGCGUUGGCc-UAG- -5'
29975 3' -54.9 NC_006273.1 + 152420 0.66 0.97641
Target:  5'- -aCGCUGCUAcUCACGac-CCGuGGUCa -3'
miRNA:   3'- cgGCGACGAUuGGUGCguuGGC-CUAG- -5'
29975 3' -54.9 NC_006273.1 + 185890 0.66 0.97641
Target:  5'- cGCCGUuaUGCUcuACCGCGgCGACgUGGAg- -3'
miRNA:   3'- -CGGCG--ACGAu-UGGUGC-GUUG-GCCUag -5'
29975 3' -54.9 NC_006273.1 + 112015 0.66 0.973902
Target:  5'- cGUCGCUGau-ACCGCGgAAUcaacggacgCGGAUCu -3'
miRNA:   3'- -CGGCGACgauUGGUGCgUUG---------GCCUAG- -5'
29975 3' -54.9 NC_006273.1 + 141131 0.66 0.973902
Target:  5'- cGCaGCgUGCgGACCGCaGCAcgGCCGGAa- -3'
miRNA:   3'- -CGgCG-ACGaUUGGUG-CGU--UGGCCUag -5'
29975 3' -54.9 NC_006273.1 + 167787 0.66 0.973902
Target:  5'- cGCCGCgGCgcuACCACGaugguGCgaUGGGUCu -3'
miRNA:   3'- -CGGCGaCGau-UGGUGCgu---UG--GCCUAG- -5'
29975 3' -54.9 NC_006273.1 + 73106 0.66 0.973902
Target:  5'- cGCCGUUGCUGuuCCucCGCAGaaGGGccgUCg -3'
miRNA:   3'- -CGGCGACGAUu-GGu-GCGUUggCCU---AG- -5'
29975 3' -54.9 NC_006273.1 + 110539 0.66 0.973902
Target:  5'- uGCCGCcGCUcuuCCACGgAccGCUGGcgCg -3'
miRNA:   3'- -CGGCGaCGAuu-GGUGCgU--UGGCCuaG- -5'
29975 3' -54.9 NC_006273.1 + 88171 0.66 0.973902
Target:  5'- aGCCGUgaccauCUAcuACCugGUAuGCUGGAUCa -3'
miRNA:   3'- -CGGCGac----GAU--UGGugCGU-UGGCCUAG- -5'
29975 3' -54.9 NC_006273.1 + 103733 0.66 0.973902
Target:  5'- cGCCGCgucaGCgucguaagccACCACGC-GCCGGuacUCg -3'
miRNA:   3'- -CGGCGa---CGau--------UGGUGCGuUGGCCu--AG- -5'
29975 3' -54.9 NC_006273.1 + 137701 0.66 0.973902
Target:  5'- uGCUGUUGUUcuACCGCGaCGGCgaUGGAUCc -3'
miRNA:   3'- -CGGCGACGAu-UGGUGC-GUUG--GCCUAG- -5'
29975 3' -54.9 NC_006273.1 + 129584 0.66 0.973902
Target:  5'- gGCgGCUccGCUAugC-CGCG-CCGGGUUu -3'
miRNA:   3'- -CGgCGA--CGAUugGuGCGUuGGCCUAG- -5'
29975 3' -54.9 NC_006273.1 + 50878 0.66 0.973902
Target:  5'- aCCGCUGUUGGacagugaUACGCGuuACCGGcUCc -3'
miRNA:   3'- cGGCGACGAUUg------GUGCGU--UGGCCuAG- -5'
29975 3' -54.9 NC_006273.1 + 103525 0.66 0.973902
Target:  5'- uGCCGUcgaUGC-GGCCGcCGUAGCCGGc-- -3'
miRNA:   3'- -CGGCG---ACGaUUGGU-GCGUUGGCCuag -5'
29975 3' -54.9 NC_006273.1 + 22267 0.66 0.973902
Target:  5'- uGCCGCUccaucGC-AGCCACGC-GCUGGu-- -3'
miRNA:   3'- -CGGCGA-----CGaUUGGUGCGuUGGCCuag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.