miRNA display CGI


Results 1 - 20 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29975 5' -53.5 NC_006273.1 + 4913 0.66 0.991809
Target:  5'- cCGGCCgauUCGCCcGCcggggcuucuggagaACGccggaGCAGCAGCg -3'
miRNA:   3'- cGCUGGa--AGCGGaCG---------------UGC-----UGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 40901 0.66 0.991369
Target:  5'- gGCGugCUgggCGCCgGCcCGGUAACGGg -3'
miRNA:   3'- -CGCugGAa--GCGGaCGuGCUGUUGUCg -5'
29975 5' -53.5 NC_006273.1 + 67291 0.66 0.991369
Target:  5'- cGUGACCUacaUGCUgGCGCGcCGGCGGg -3'
miRNA:   3'- -CGCUGGAa--GCGGaCGUGCuGUUGUCg -5'
29975 5' -53.5 NC_006273.1 + 199495 0.66 0.991369
Target:  5'- cGCuGugCUggcCGCCgcUGCACGGCAuCAuGCu -3'
miRNA:   3'- -CG-CugGAa--GCGG--ACGUGCUGUuGU-CG- -5'
29975 5' -53.5 NC_006273.1 + 113273 0.66 0.991369
Target:  5'- aGCGuCUgUCggGCCaggUGCGCGACGACGuGCu -3'
miRNA:   3'- -CGCuGGaAG--CGG---ACGUGCUGUUGU-CG- -5'
29975 5' -53.5 NC_006273.1 + 42739 0.66 0.991369
Target:  5'- gGCGACga--GCC-GCAUaGCGACGGCg -3'
miRNA:   3'- -CGCUGgaagCGGaCGUGcUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 220824 0.66 0.991369
Target:  5'- uUGACgc-CGCCUGUuuGGCGGCGGUa -3'
miRNA:   3'- cGCUGgaaGCGGACGugCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 22955 0.66 0.991369
Target:  5'- aGCGGCCa-CGUCUGggUG-CAGCAGUa -3'
miRNA:   3'- -CGCUGGaaGCGGACguGCuGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 188027 0.66 0.991369
Target:  5'- uGCuAUCgUCGCCgGUuucggGCGAUGACAGCg -3'
miRNA:   3'- -CGcUGGaAGCGGaCG-----UGCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 87424 0.66 0.991369
Target:  5'- gGCu-CCUcCGCCUcGgGCGACGGgGGCu -3'
miRNA:   3'- -CGcuGGAaGCGGA-CgUGCUGUUgUCG- -5'
29975 5' -53.5 NC_006273.1 + 80961 0.66 0.991369
Target:  5'- cGCGGCCacgagcugUCGUCggGCACGGCcacCAGg -3'
miRNA:   3'- -CGCUGGa-------AGCGGa-CGUGCUGuu-GUCg -5'
29975 5' -53.5 NC_006273.1 + 104545 0.66 0.991369
Target:  5'- uGUGACCcgcgcucgUCGUCgggaGCGCGGuggaaGACAGCg -3'
miRNA:   3'- -CGCUGGa-------AGCGGa---CGUGCUg----UUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 174645 0.66 0.991256
Target:  5'- -aGACUucgagaaUUCGUCUGaGCGGCGcugACAGCa -3'
miRNA:   3'- cgCUGG-------AAGCGGACgUGCUGU---UGUCG- -5'
29975 5' -53.5 NC_006273.1 + 126807 0.66 0.991256
Target:  5'- aCGugC-UCGCCcacgaauUGCACGGCcaaaAACAGUu -3'
miRNA:   3'- cGCugGaAGCGG-------ACGUGCUG----UUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 163087 0.66 0.990187
Target:  5'- aGCG-CCg-CG-CUGCGCGGCGgccucaucgGCAGCg -3'
miRNA:   3'- -CGCuGGaaGCgGACGUGCUGU---------UGUCG- -5'
29975 5' -53.5 NC_006273.1 + 70184 0.66 0.990187
Target:  5'- aCGACCUgUGCCgcgGCuACGACcuCAcGCg -3'
miRNA:   3'- cGCUGGAaGCGGa--CG-UGCUGuuGU-CG- -5'
29975 5' -53.5 NC_006273.1 + 233512 0.66 0.990187
Target:  5'- cGUGugCgcgaaaGCCUGUuCG-CGGCAGCg -3'
miRNA:   3'- -CGCugGaag---CGGACGuGCuGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 147409 0.66 0.990187
Target:  5'- cGCGcCCaguggCGUCgGCGCGGCGucCGGCg -3'
miRNA:   3'- -CGCuGGaa---GCGGaCGUGCUGUu-GUCG- -5'
29975 5' -53.5 NC_006273.1 + 81838 0.66 0.990187
Target:  5'- uUGACCUgCGCCga-GCGAguGCGGUu -3'
miRNA:   3'- cGCUGGAaGCGGacgUGCUguUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 151241 0.66 0.990187
Target:  5'- cGCG-CCgcuccUCGUCUGC-CGugAucaaGCGGCg -3'
miRNA:   3'- -CGCuGGa----AGCGGACGuGCugU----UGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.