miRNA display CGI


Results 1 - 20 of 334 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29975 5' -53.5 NC_006273.1 + 171180 0.66 0.98587
Target:  5'- cGCGACCccgccgaGUCUGCACGuuGGguGUg -3'
miRNA:   3'- -CGCUGGaag----CGGACGUGCugUUguCG- -5'
29975 5' -53.5 NC_006273.1 + 162216 0.66 0.988744
Target:  5'- cGCGucuaccGCCUccgcCGUCUGCGuguccucguugggUGGCAGCGGCg -3'
miRNA:   3'- -CGC------UGGAa---GCGGACGU-------------GCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 29882 0.66 0.985704
Target:  5'- aGCGGUCUUCuUCUGCugauccgGCGACAACAcGCc -3'
miRNA:   3'- -CGCUGGAAGcGGACG-------UGCUGUUGU-CG- -5'
29975 5' -53.5 NC_006273.1 + 37637 0.66 0.987445
Target:  5'- cGCGACCcgCGCg-GCAaaaGGCAcgcuguugACGGCg -3'
miRNA:   3'- -CGCUGGaaGCGgaCGUg--CUGU--------UGUCG- -5'
29975 5' -53.5 NC_006273.1 + 2202 0.66 0.98587
Target:  5'- aCGACCcgcacauggCGCUggGCACGAC-GCGGUg -3'
miRNA:   3'- cGCUGGaa-------GCGGa-CGUGCUGuUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 37409 0.66 0.986988
Target:  5'- cGCGACUgagCGCCgggGCGCGcCGcuacuuggguuuuuAUAGCc -3'
miRNA:   3'- -CGCUGGaa-GCGGa--CGUGCuGU--------------UGUCG- -5'
29975 5' -53.5 NC_006273.1 + 104605 0.66 0.987445
Target:  5'- cUGGCCcagCGCCUGUGCGA--GCuGCu -3'
miRNA:   3'- cGCUGGaa-GCGGACGUGCUguUGuCG- -5'
29975 5' -53.5 NC_006273.1 + 140733 0.66 0.988882
Target:  5'- cGgGGCCggCGCUUGUGCGGucgaGACgAGCg -3'
miRNA:   3'- -CgCUGGaaGCGGACGUGCUg---UUG-UCG- -5'
29975 5' -53.5 NC_006273.1 + 173052 0.66 0.988036
Target:  5'- -gGGCCUUaGCCUGCAguGCAccccccaacuuguuaGCGGCg -3'
miRNA:   3'- cgCUGGAAgCGGACGUgcUGU---------------UGUCG- -5'
29975 5' -53.5 NC_006273.1 + 116432 0.66 0.98587
Target:  5'- gGCGGCUUucUCGCCcGCuACGAC--CAGUc -3'
miRNA:   3'- -CGCUGGA--AGCGGaCG-UGCUGuuGUCG- -5'
29975 5' -53.5 NC_006273.1 + 46113 0.66 0.985704
Target:  5'- uGCGGgcagaacCCUcCGUCUccaACGACGACGGCa -3'
miRNA:   3'- -CGCU-------GGAaGCGGAcg-UGCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 129458 0.66 0.987445
Target:  5'- cCGACCagUUCuCCauCGCGGCGGCGGCg -3'
miRNA:   3'- cGCUGG--AAGcGGacGUGCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 185865 0.66 0.987294
Target:  5'- aUGACC-UCGuCUUGcCACGcgucgaagcggucGCAGCAGCg -3'
miRNA:   3'- cGCUGGaAGC-GGAC-GUGC-------------UGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 30576 0.66 0.98587
Target:  5'- uCGuCCUUCgaGCUcgUGCGCGAgacCGGCGGCa -3'
miRNA:   3'- cGCuGGAAG--CGG--ACGUGCU---GUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 77170 0.66 0.988036
Target:  5'- cGCGcGCCcgCGCCucacgcugcacgaccUGCACGACAucuuccGCgAGCa -3'
miRNA:   3'- -CGC-UGGaaGCGG---------------ACGUGCUGU------UG-UCG- -5'
29975 5' -53.5 NC_006273.1 + 65245 0.66 0.987445
Target:  5'- uCGACCUcaccggcgUCGuCCgagaaaGCGCGgacACGGCAGCg -3'
miRNA:   3'- cGCUGGA--------AGC-GGa-----CGUGC---UGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 42739 0.66 0.991369
Target:  5'- gGCGACga--GCC-GCAUaGCGACGGCg -3'
miRNA:   3'- -CGCUGgaagCGGaCGUGcUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 100260 0.66 0.987445
Target:  5'- gGCGuACCggUGaCUUGCaACGcGCGACGGCg -3'
miRNA:   3'- -CGC-UGGaaGC-GGACG-UGC-UGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 232199 0.66 0.988744
Target:  5'- cGUGACgCgUCGCaUGuCGCGGCAcaaucugGCAGCg -3'
miRNA:   3'- -CGCUG-GaAGCGgAC-GUGCUGU-------UGUCG- -5'
29975 5' -53.5 NC_006273.1 + 144200 0.66 0.988882
Target:  5'- cGUGGCCga-GCg-GUGCGACGAcCGGCa -3'
miRNA:   3'- -CGCUGGaagCGgaCGUGCUGUU-GUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.