miRNA display CGI


Results 41 - 60 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29975 5' -53.5 NC_006273.1 + 29882 0.66 0.985704
Target:  5'- aGCGGUCUUCuUCUGCugauccgGCGACAACAcGCc -3'
miRNA:   3'- -CGCUGGAAGcGGACG-------UGCUGUUGU-CG- -5'
29975 5' -53.5 NC_006273.1 + 171180 0.66 0.98587
Target:  5'- cGCGACCccgccgaGUCUGCACGuuGGguGUg -3'
miRNA:   3'- -CGCUGGaag----CGGACGUGCugUUguCG- -5'
29975 5' -53.5 NC_006273.1 + 90299 0.66 0.987445
Target:  5'- gGUGAUCagCGCC-GC-CGcCAGCGGCg -3'
miRNA:   3'- -CGCUGGaaGCGGaCGuGCuGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 185825 0.66 0.98587
Target:  5'- uGCGACCacUUC-CacacuaUGCGCGACuacCAGCg -3'
miRNA:   3'- -CGCUGG--AAGcGg-----ACGUGCUGuu-GUCG- -5'
29975 5' -53.5 NC_006273.1 + 179009 0.66 0.988882
Target:  5'- cGCGAUggagaaaaCGCCgGCGgaGACGACGGCg -3'
miRNA:   3'- -CGCUGgaa-----GCGGaCGUg-CUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 552 0.66 0.988882
Target:  5'- cCGACCgcCGCCggUGCGgGACAGggcuaAGCg -3'
miRNA:   3'- cGCUGGaaGCGG--ACGUgCUGUUg----UCG- -5'
29975 5' -53.5 NC_006273.1 + 162216 0.66 0.988744
Target:  5'- cGCGucuaccGCCUccgcCGUCUGCGuguccucguugggUGGCAGCGGCg -3'
miRNA:   3'- -CGC------UGGAa---GCGGACGU-------------GCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 113273 0.66 0.991369
Target:  5'- aGCGuCUgUCggGCCaggUGCGCGACGACGuGCu -3'
miRNA:   3'- -CGCuGGaAG--CGG---ACGUGCUGUUGU-CG- -5'
29975 5' -53.5 NC_006273.1 + 188027 0.66 0.991369
Target:  5'- uGCuAUCgUCGCCgGUuucggGCGAUGACAGCg -3'
miRNA:   3'- -CGcUGGaAGCGGaCG-----UGCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 4913 0.66 0.991809
Target:  5'- cCGGCCgauUCGCCcGCcggggcuucuggagaACGccggaGCAGCAGCg -3'
miRNA:   3'- cGCUGGa--AGCGGaCG---------------UGC-----UGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 87424 0.66 0.991369
Target:  5'- gGCu-CCUcCGCCUcGgGCGACGGgGGCu -3'
miRNA:   3'- -CGcuGGAaGCGGA-CgUGCUGUUgUCG- -5'
29975 5' -53.5 NC_006273.1 + 74609 0.66 0.98968
Target:  5'- cGUGACUgcaggucgcgcagUCGCCgUGCACGuACuugaggaaGGCGGCg -3'
miRNA:   3'- -CGCUGGa------------AGCGG-ACGUGC-UG--------UUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 163922 0.66 0.990187
Target:  5'- uGCGAUCgcCGCC-GCcuCGAUcGCGGCg -3'
miRNA:   3'- -CGCUGGaaGCGGaCGu-GCUGuUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 126807 0.66 0.991256
Target:  5'- aCGugC-UCGCCcacgaauUGCACGGCcaaaAACAGUu -3'
miRNA:   3'- cGCugGaAGCGG-------ACGUGCUG----UUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 77170 0.66 0.988036
Target:  5'- cGCGcGCCcgCGCCucacgcugcacgaccUGCACGACAucuuccGCgAGCa -3'
miRNA:   3'- -CGC-UGGaaGCGG---------------ACGUGCUGU------UG-UCG- -5'
29975 5' -53.5 NC_006273.1 + 144200 0.66 0.988882
Target:  5'- cGUGGCCga-GCg-GUGCGACGAcCGGCa -3'
miRNA:   3'- -CGCUGGaagCGgaCGUGCUGUU-GUCG- -5'
29975 5' -53.5 NC_006273.1 + 204195 0.66 0.988882
Target:  5'- gGCaGCCUggaCGCCgGC-CGGCAAUggAGCa -3'
miRNA:   3'- -CGcUGGAa--GCGGaCGuGCUGUUG--UCG- -5'
29975 5' -53.5 NC_006273.1 + 151241 0.66 0.990187
Target:  5'- cGCG-CCgcuccUCGUCUGC-CGugAucaaGCGGCg -3'
miRNA:   3'- -CGCuGGa----AGCGGACGuGCugU----UGUCG- -5'
29975 5' -53.5 NC_006273.1 + 87598 0.66 0.988882
Target:  5'- uGCGacGCCguccgUCGCC-GCuguuGCGGCggUAGCu -3'
miRNA:   3'- -CGC--UGGa----AGCGGaCG----UGCUGuuGUCG- -5'
29975 5' -53.5 NC_006273.1 + 65245 0.66 0.987445
Target:  5'- uCGACCUcaccggcgUCGuCCgagaaaGCGCGgacACGGCAGCg -3'
miRNA:   3'- cGCUGGA--------AGC-GGa-----CGUGC---UGUUGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.