miRNA display CGI


Results 61 - 80 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29975 5' -53.5 NC_006273.1 + 113273 0.66 0.991369
Target:  5'- aGCGuCUgUCggGCCaggUGCGCGACGACGuGCu -3'
miRNA:   3'- -CGCuGGaAG--CGG---ACGUGCUGUUGU-CG- -5'
29975 5' -53.5 NC_006273.1 + 70184 0.66 0.990187
Target:  5'- aCGACCUgUGCCgcgGCuACGACcuCAcGCg -3'
miRNA:   3'- cGCUGGAaGCGGa--CG-UGCUGuuGU-CG- -5'
29975 5' -53.5 NC_006273.1 + 163087 0.66 0.990187
Target:  5'- aGCG-CCg-CG-CUGCGCGGCGgccucaucgGCAGCg -3'
miRNA:   3'- -CGCuGGaaGCgGACGUGCUGU---------UGUCG- -5'
29975 5' -53.5 NC_006273.1 + 101635 0.66 0.98587
Target:  5'- cGCGucACgCUg-GCCgaagGCACGACGGCAcGCu -3'
miRNA:   3'- -CGC--UG-GAagCGGa---CGUGCUGUUGU-CG- -5'
29975 5' -53.5 NC_006273.1 + 203658 0.66 0.98587
Target:  5'- cGCGuagUCUUCGC--GCaACGACGGCAGUu -3'
miRNA:   3'- -CGCu--GGAAGCGgaCG-UGCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 16156 0.66 0.988882
Target:  5'- cGCGACCaa---CUGCugGACGACGu- -3'
miRNA:   3'- -CGCUGGaagcgGACGugCUGUUGUcg -5'
29975 5' -53.5 NC_006273.1 + 70327 0.66 0.988882
Target:  5'- cGCG-CCgugCGUCUGCcCGugAGCAccGCu -3'
miRNA:   3'- -CGCuGGaa-GCGGACGuGCugUUGU--CG- -5'
29975 5' -53.5 NC_006273.1 + 185825 0.66 0.98587
Target:  5'- uGCGACCacUUC-CacacuaUGCGCGACuacCAGCg -3'
miRNA:   3'- -CGCUGG--AAGcGg-----ACGUGCUGuu-GUCG- -5'
29975 5' -53.5 NC_006273.1 + 95517 0.66 0.98587
Target:  5'- gGCGGCCggaGaCUGCGC--CGACAGCu -3'
miRNA:   3'- -CGCUGGaagCgGACGUGcuGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 29882 0.66 0.985704
Target:  5'- aGCGGUCUUCuUCUGCugauccgGCGACAACAcGCc -3'
miRNA:   3'- -CGCUGGAAGcGGACG-------UGCUGUUGU-CG- -5'
29975 5' -53.5 NC_006273.1 + 24830 0.66 0.98587
Target:  5'- cGCGGaaguagUCUUCaUCUGuCGCGACAACuGCa -3'
miRNA:   3'- -CGCU------GGAAGcGGAC-GUGCUGUUGuCG- -5'
29975 5' -53.5 NC_006273.1 + 199495 0.66 0.991369
Target:  5'- cGCuGugCUggcCGCCgcUGCACGGCAuCAuGCu -3'
miRNA:   3'- -CG-CugGAa--GCGG--ACGUGCUGUuGU-CG- -5'
29975 5' -53.5 NC_006273.1 + 174645 0.66 0.991256
Target:  5'- -aGACUucgagaaUUCGUCUGaGCGGCGcugACAGCa -3'
miRNA:   3'- cgCUGG-------AAGCGGACgUGCUGU---UGUCG- -5'
29975 5' -53.5 NC_006273.1 + 99702 0.67 0.97802
Target:  5'- aGgGACCgcggUCGuCUUGUA-GACGACGGUg -3'
miRNA:   3'- -CgCUGGa---AGC-GGACGUgCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 92143 0.67 0.980016
Target:  5'- cGCGugCgggUCGCagaugagcagcuuCUGCAgCGGCAugGGUc -3'
miRNA:   3'- -CGCugGa--AGCG-------------GACGU-GCUGUugUCG- -5'
29975 5' -53.5 NC_006273.1 + 110391 0.67 0.97802
Target:  5'- cGCGGCCUgcugCGCaauaUGaCGCuGACGuugauGCGGCg -3'
miRNA:   3'- -CGCUGGAa---GCGg---AC-GUG-CUGU-----UGUCG- -5'
29975 5' -53.5 NC_006273.1 + 161666 0.67 0.97802
Target:  5'- uGCGACggggucggCGCuCUGC-CGGCuGCGGCg -3'
miRNA:   3'- -CGCUGgaa-----GCG-GACGuGCUGuUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 229007 0.67 0.97802
Target:  5'- cGUGAUCa-CGCCuUGCGCGGCcguugggguACGGCg -3'
miRNA:   3'- -CGCUGGaaGCGG-ACGUGCUGu--------UGUCG- -5'
29975 5' -53.5 NC_006273.1 + 142764 0.67 0.979802
Target:  5'- -gGGCCUgauccgcacgcgCGCC-GCugGcgaGCAACAGCa -3'
miRNA:   3'- cgCUGGAa-----------GCGGaCGugC---UGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 129178 0.67 0.98023
Target:  5'- cGCGGCa----CCUGUACGugGaACAGCa -3'
miRNA:   3'- -CGCUGgaagcGGACGUGCugU-UGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.