miRNA display CGI


Results 81 - 100 of 334 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29975 5' -53.5 NC_006273.1 + 71998 0.67 0.98227
Target:  5'- gGCGGuCC-UCGCgacgCUGCugugguugACGACGACAGUc -3'
miRNA:   3'- -CGCU-GGaAGCG----GACG--------UGCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 174276 0.67 0.975633
Target:  5'- aGCGACCaugaGCCgcuggagGCAUGGgAGCAGg -3'
miRNA:   3'- -CGCUGGaag-CGGa------CGUGCUgUUGUCg -5'
29975 5' -53.5 NC_006273.1 + 126845 0.67 0.975633
Target:  5'- aCGACag--GCCUGCA--GCAGCGGCg -3'
miRNA:   3'- cGCUGgaagCGGACGUgcUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 94813 0.67 0.975633
Target:  5'- cGCGGCggUCgGCCg--ACGACGACGGUa -3'
miRNA:   3'- -CGCUGgaAG-CGGacgUGCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 76718 0.67 0.975633
Target:  5'- uGCGACC--CGCagUGCGcCGGCAACAuccGCg -3'
miRNA:   3'- -CGCUGGaaGCGg-ACGU-GCUGUUGU---CG- -5'
29975 5' -53.5 NC_006273.1 + 122847 0.67 0.98023
Target:  5'- gGCGACCg-CGUCagacgGgGCGGCGACGGg -3'
miRNA:   3'- -CGCUGGaaGCGGa----CgUGCUGUUGUCg -5'
29975 5' -53.5 NC_006273.1 + 84550 0.67 0.98023
Target:  5'- cGCG-CaagUGCCUGCACGACcugcucCAGUa -3'
miRNA:   3'- -CGCuGgaaGCGGACGUGCUGuu----GUCG- -5'
29975 5' -53.5 NC_006273.1 + 79917 0.67 0.98023
Target:  5'- aGCGugUa-CGUCUGCGCcGGCGACAcauGCg -3'
miRNA:   3'- -CGCugGaaGCGGACGUG-CUGUUGU---CG- -5'
29975 5' -53.5 NC_006273.1 + 163486 0.67 0.984147
Target:  5'- cUGGCUUUCGacgucauucugcCCUGCGCGGCAcGCAccuGCg -3'
miRNA:   3'- cGCUGGAAGC------------GGACGUGCUGU-UGU---CG- -5'
29975 5' -53.5 NC_006273.1 + 200249 0.67 0.984147
Target:  5'- aGCaGCCauacaUCGCCcgcGUACGACGuCAGCg -3'
miRNA:   3'- -CGcUGGa----AGCGGa--CGUGCUGUuGUCG- -5'
29975 5' -53.5 NC_006273.1 + 170705 0.67 0.984147
Target:  5'- aGCG-CCUcgGUCUGCAgGACGGC-GCu -3'
miRNA:   3'- -CGCuGGAagCGGACGUgCUGUUGuCG- -5'
29975 5' -53.5 NC_006273.1 + 113347 0.67 0.984147
Target:  5'- cGCGACgUgccCGUCuuugUGCACGA--ACAGCa -3'
miRNA:   3'- -CGCUGgAa--GCGG----ACGUGCUguUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 135352 0.67 0.98227
Target:  5'- cCG-UCUUUGCCgGUACGACAACGa- -3'
miRNA:   3'- cGCuGGAAGCGGaCGUGCUGUUGUcg -5'
29975 5' -53.5 NC_006273.1 + 63194 0.67 0.98023
Target:  5'- cGCGGCC-UCGCCUuugccuccGCuuGACGGCGu- -3'
miRNA:   3'- -CGCUGGaAGCGGA--------CGugCUGUUGUcg -5'
29975 5' -53.5 NC_006273.1 + 161666 0.67 0.97802
Target:  5'- uGCGACggggucggCGCuCUGC-CGGCuGCGGCg -3'
miRNA:   3'- -CGCUGgaa-----GCG-GACGuGCUGuUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 196880 0.67 0.984147
Target:  5'- aCGACg-UCGCC-GCcaGCGGCgAGCGGCa -3'
miRNA:   3'- cGCUGgaAGCGGaCG--UGCUG-UUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 99831 0.67 0.982073
Target:  5'- uGCGACggUgGCUggGCgggaggaGCGGCGGCGGCg -3'
miRNA:   3'- -CGCUGgaAgCGGa-CG-------UGCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 142764 0.67 0.979802
Target:  5'- -gGGCCUgauccgcacgcgCGCC-GCugGcgaGCAACAGCa -3'
miRNA:   3'- cgCUGGAa-----------GCGGaCGugC---UGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 229007 0.67 0.97802
Target:  5'- cGUGAUCa-CGCCuUGCGCGGCcguugggguACGGCg -3'
miRNA:   3'- -CGCUGGaaGCGG-ACGUGCUGu--------UGUCG- -5'
29975 5' -53.5 NC_006273.1 + 70820 0.67 0.98023
Target:  5'- aGCGGCCUg-GCCUucgGCACGcUGGCGGg -3'
miRNA:   3'- -CGCUGGAagCGGA---CGUGCuGUUGUCg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.