miRNA display CGI


Results 1 - 20 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29975 5' -53.5 NC_006273.1 + 12456 1.15 0.003639
Target:  5'- uGCGACCUUCGCCUGCACGACAACAGCa -3'
miRNA:   3'- -CGCUGGAAGCGGACGUGCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 194876 0.85 0.240919
Target:  5'- aGCGcGCCgggUCGCCUGUcCGGCAGCAGCc -3'
miRNA:   3'- -CGC-UGGa--AGCGGACGuGCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 189798 0.83 0.297188
Target:  5'- cGCGGCCauggcCGCCUGCACGGCAGCuuGUa -3'
miRNA:   3'- -CGCUGGaa---GCGGACGUGCUGUUGu-CG- -5'
29975 5' -53.5 NC_006273.1 + 18944 0.81 0.390564
Target:  5'- uGCGACCUacUCGCg-GCACGACAagguacccaacaacaGCAGCg -3'
miRNA:   3'- -CGCUGGA--AGCGgaCGUGCUGU---------------UGUCG- -5'
29975 5' -53.5 NC_006273.1 + 201267 0.79 0.493553
Target:  5'- cGCGGCCUUuugcgagugCGgCgacggGCGCGACGACGGCg -3'
miRNA:   3'- -CGCUGGAA---------GCgGa----CGUGCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 68759 0.79 0.503027
Target:  5'- --aGCUUUCGCCUGCccaccucaugaaGCGGCGGCGGCg -3'
miRNA:   3'- cgcUGGAAGCGGACG------------UGCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 117013 0.77 0.575247
Target:  5'- gGCGAUCccuUUCgcucagacagcuacgGCCUGUugGGCAACAGCg -3'
miRNA:   3'- -CGCUGG---AAG---------------CGGACGugCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 125086 0.77 0.611296
Target:  5'- aUGGCCUUCGCCUacgcauuaGCACuguucGCAGCAGCc -3'
miRNA:   3'- cGCUGGAAGCGGA--------CGUGc----UGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 37216 0.77 0.617332
Target:  5'- cGCGGCCgacgcgcgUGCCcaggcagaggaagGCGCGACGGCGGCg -3'
miRNA:   3'- -CGCUGGaa------GCGGa------------CGUGCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 110948 0.76 0.631428
Target:  5'- gGCGAgCCgcgcaCGCCcGCGCGGCcGCAGCa -3'
miRNA:   3'- -CGCU-GGaa---GCGGaCGUGCUGuUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 23368 0.76 0.641499
Target:  5'- aGCGGCUgcgcaUUCGCCUGCcgcauCGAUAcCAGCg -3'
miRNA:   3'- -CGCUGG-----AAGCGGACGu----GCUGUuGUCG- -5'
29975 5' -53.5 NC_006273.1 + 154411 0.76 0.641499
Target:  5'- cUGACCUggUgGCCgUGCcCGACGACAGCu -3'
miRNA:   3'- cGCUGGA--AgCGG-ACGuGCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 150343 0.76 0.641499
Target:  5'- uCGAUCgcgUGCCUGCGCGACGAacuGCa -3'
miRNA:   3'- cGCUGGaa-GCGGACGUGCUGUUgu-CG- -5'
29975 5' -53.5 NC_006273.1 + 178577 0.76 0.651563
Target:  5'- --uGCCggCgGUCUGCACGACGACGGCc -3'
miRNA:   3'- cgcUGGaaG-CGGACGUGCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 144430 0.76 0.651563
Target:  5'- gGCGACCacggugCGaCUGCACGGCGGCgaGGCg -3'
miRNA:   3'- -CGCUGGaa----GCgGACGUGCUGUUG--UCG- -5'
29975 5' -53.5 NC_006273.1 + 101370 0.76 0.671637
Target:  5'- gGCGGCCgugcgcaUCGCCUGCcucaucCGACAgagcgugcagaGCAGCa -3'
miRNA:   3'- -CGCUGGa------AGCGGACGu-----GCUGU-----------UGUCG- -5'
29975 5' -53.5 NC_006273.1 + 93588 0.75 0.681631
Target:  5'- gGCGGCCUgcgCgGCCUGUaccGCGGCuugAGCGGCg -3'
miRNA:   3'- -CGCUGGAa--G-CGGACG---UGCUG---UUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 214845 0.75 0.691586
Target:  5'- cGCGuuaGCCUccugCGCCUGCAuggUGGCGACGGUc -3'
miRNA:   3'- -CGC---UGGAa---GCGGACGU---GCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 189018 0.75 0.691586
Target:  5'- gGCG-UCggggGCCUGUGCGACGACAGCc -3'
miRNA:   3'- -CGCuGGaag-CGGACGUGCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 703 0.75 0.701493
Target:  5'- aCGGCCUUCcagaCUGCACGGCcccaaGGCGGCg -3'
miRNA:   3'- cGCUGGAAGcg--GACGUGCUG-----UUGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.