miRNA display CGI


Results 41 - 60 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29975 5' -53.5 NC_006273.1 + 104509 0.72 0.838443
Target:  5'- cGCGAUCggCgGCCgggucGCGCGGCAgugACAGCu -3'
miRNA:   3'- -CGCUGGaaG-CGGa----CGUGCUGU---UGUCG- -5'
29975 5' -53.5 NC_006273.1 + 101552 0.72 0.838443
Target:  5'- -aGACagaagCGCCgUGCGCGACGggcGCGGCg -3'
miRNA:   3'- cgCUGgaa--GCGG-ACGUGCUGU---UGUCG- -5'
29975 5' -53.5 NC_006273.1 + 919 0.72 0.838443
Target:  5'- uGCGcaGCgCUUCGCUuuucgGgGCGGCGACGGCg -3'
miRNA:   3'- -CGC--UG-GAAGCGGa----CgUGCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 61913 0.72 0.838443
Target:  5'- uGCGACa----CCaGCACGACGGCGGCg -3'
miRNA:   3'- -CGCUGgaagcGGaCGUGCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 176268 0.72 0.846414
Target:  5'- aGCGugUUaaugaagCGCUaccgUGCGCGugAGCAGCg -3'
miRNA:   3'- -CGCugGAa------GCGG----ACGUGCugUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 98195 0.72 0.846414
Target:  5'- gGCGACgagcUCGCUga-GCGGCAGCGGCg -3'
miRNA:   3'- -CGCUGga--AGCGGacgUGCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 204586 0.72 0.854196
Target:  5'- aCGACCgUCGCUggacCACGACAACcggAGCg -3'
miRNA:   3'- cGCUGGaAGCGGac--GUGCUGUUG---UCG- -5'
29975 5' -53.5 NC_006273.1 + 40029 0.72 0.854196
Target:  5'- gGCGACUagUUGCgUGUgcugcgguggguACGGCGACGGCg -3'
miRNA:   3'- -CGCUGGa-AGCGgACG------------UGCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 143421 0.72 0.854196
Target:  5'- cGCGGCCU--GCCgcgcGUugGAgAACGGCa -3'
miRNA:   3'- -CGCUGGAagCGGa---CGugCUgUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 91 0.72 0.854196
Target:  5'- gGCGACUagUUGCgUGUgcugcgguggguACGGCGACGGCg -3'
miRNA:   3'- -CGCUGGa-AGCGgACG------------UGCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 234922 0.72 0.854196
Target:  5'- gGCGACUagUUGCgUGUgcugcgguggguACGGCGACGGCg -3'
miRNA:   3'- -CGCUGGa-AGCGgACG------------UGCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 77328 0.72 0.854196
Target:  5'- uCGACaucUCGCC-GUACGGCAACgAGCa -3'
miRNA:   3'- cGCUGga-AGCGGaCGUGCUGUUG-UCG- -5'
29975 5' -53.5 NC_006273.1 + 2166 0.72 0.854196
Target:  5'- cGCGACgg-CGgCgGCAgCGGCAGCAGCg -3'
miRNA:   3'- -CGCUGgaaGCgGaCGU-GCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 197059 0.72 0.854196
Target:  5'- cGCGACgg-CGgCgGCAgCGGCAGCAGCg -3'
miRNA:   3'- -CGCUGgaaGCgGaCGU-GCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 145675 0.72 0.861784
Target:  5'- cGCGGCggUCGCaUGCugGGCGcUAGCg -3'
miRNA:   3'- -CGCUGgaAGCGgACGugCUGUuGUCG- -5'
29975 5' -53.5 NC_006273.1 + 122992 0.72 0.861784
Target:  5'- gGCGAcgguCCUUCGUcgagcucgcaCUGCugGuuCAACAGCg -3'
miRNA:   3'- -CGCU----GGAAGCG----------GACGugCu-GUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 186742 0.72 0.861784
Target:  5'- uGCGACCgcUGCgUGCGC--CGACGGCg -3'
miRNA:   3'- -CGCUGGaaGCGgACGUGcuGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 36769 0.72 0.861784
Target:  5'- gGUGGCCUgagcaCGCCgagGCccagUGGCGGCAGCa -3'
miRNA:   3'- -CGCUGGAa----GCGGa--CGu---GCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 195596 0.71 0.869171
Target:  5'- aCGGCCUUC-CagaUGCACGGCcccaaGGCGGCg -3'
miRNA:   3'- cGCUGGAAGcGg--ACGUGCUG-----UUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 9528 0.71 0.869171
Target:  5'- uGCGACCUUUGUg-GCGCGAUugaGACAccGCa -3'
miRNA:   3'- -CGCUGGAAGCGgaCGUGCUG---UUGU--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.