miRNA display CGI


Results 61 - 80 of 334 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29975 5' -53.5 NC_006273.1 + 70918 0.71 0.869171
Target:  5'- cCGGCCUcgggUUGCCUggacgccuggGCGCGAC-GCGGCg -3'
miRNA:   3'- cGCUGGA----AGCGGA----------CGUGCUGuUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 9528 0.71 0.869171
Target:  5'- uGCGACCUUUGUg-GCGCGAUugaGACAccGCa -3'
miRNA:   3'- -CGCUGGAAGCGgaCGUGCUG---UUGU--CG- -5'
29975 5' -53.5 NC_006273.1 + 159899 0.71 0.87422
Target:  5'- gGCGGCCgaagCGCCggcggguccugcguUGCuacugcCGGCGACGGCu -3'
miRNA:   3'- -CGCUGGaa--GCGG--------------ACGu-----GCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 66152 0.71 0.874933
Target:  5'- aGCGACagCUUCGUCUGCcuGCGACccguagacuuuCAGCg -3'
miRNA:   3'- -CGCUG--GAAGCGGACG--UGCUGuu---------GUCG- -5'
29975 5' -53.5 NC_006273.1 + 71548 0.71 0.876352
Target:  5'- gGCGGCCgcUGCCgGCgacuuGCGACAACcggAGCa -3'
miRNA:   3'- -CGCUGGaaGCGGaCG-----UGCUGUUG---UCG- -5'
29975 5' -53.5 NC_006273.1 + 142064 0.71 0.876352
Target:  5'- cGCGGCag-CGCC-GCcaGCGGCGACGGUu -3'
miRNA:   3'- -CGCUGgaaGCGGaCG--UGCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 205988 0.71 0.882635
Target:  5'- cGgGGCCgucuaCGCCUGCgacgugcGCGACGACcGCu -3'
miRNA:   3'- -CgCUGGaa---GCGGACG-------UGCUGUUGuCG- -5'
29975 5' -53.5 NC_006273.1 + 217987 0.71 0.883322
Target:  5'- cGUGGCCggCgGCCauacGCGCGGCAACcGCg -3'
miRNA:   3'- -CGCUGGaaG-CGGa---CGUGCUGUUGuCG- -5'
29975 5' -53.5 NC_006273.1 + 58844 0.71 0.88605
Target:  5'- aGUGGCaCgaCGCCauaucgggacucaaGCACGGCGGCAGCa -3'
miRNA:   3'- -CGCUG-GaaGCGGa-------------CGUGCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 201924 0.71 0.890076
Target:  5'- cGCGAgCUgcugUGCCUGCACGuuuucaAGCuGCg -3'
miRNA:   3'- -CGCUgGAa---GCGGACGUGCug----UUGuCG- -5'
29975 5' -53.5 NC_006273.1 + 140045 0.71 0.890076
Target:  5'- uCGGCCgaggUGCCggUGUugGAUAGCAGUa -3'
miRNA:   3'- cGCUGGaa--GCGG--ACGugCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 83963 0.71 0.89661
Target:  5'- gGCGagaucguaGCCgcCGCCU--ACGACGACAGCa -3'
miRNA:   3'- -CGC--------UGGaaGCGGAcgUGCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 133740 0.71 0.89661
Target:  5'- cGUGACCUUC-CUa--GCGACGGCGGCc -3'
miRNA:   3'- -CGCUGGAAGcGGacgUGCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 144857 0.71 0.89661
Target:  5'- cGCGAgUUUCuGCUUucGCACGAC-GCGGCg -3'
miRNA:   3'- -CGCUgGAAG-CGGA--CGUGCUGuUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 82030 0.71 0.89661
Target:  5'- cGCGugC--CGCCgGCcucggacgaaGCGGCAGCGGCg -3'
miRNA:   3'- -CGCugGaaGCGGaCG----------UGCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 34538 0.71 0.89661
Target:  5'- gGCGGCaagggcaCGCCUcgaaGCGCGGCccaGACAGCg -3'
miRNA:   3'- -CGCUGgaa----GCGGA----CGUGCUG---UUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 122201 0.71 0.897251
Target:  5'- gGCGACCgcgcgacuccaugcUGCCUGCGCGuACGGguGUa -3'
miRNA:   3'- -CGCUGGaa------------GCGGACGUGC-UGUUguCG- -5'
29975 5' -53.5 NC_006273.1 + 2406 0.71 0.902921
Target:  5'- gGCGcCCgcCGCCgaggccGCGCGGCGGCuGCu -3'
miRNA:   3'- -CGCuGGaaGCGGa-----CGUGCUGUUGuCG- -5'
29975 5' -53.5 NC_006273.1 + 197299 0.71 0.902921
Target:  5'- gGCGcCCgcCGCCgaggccGCGCGGCGGCuGCu -3'
miRNA:   3'- -CGCuGGaaGCGGa-----CGUGCUGUUGuCG- -5'
29975 5' -53.5 NC_006273.1 + 122061 0.71 0.902921
Target:  5'- cGCGACCca-GCUUGC-CGACcAGCAGa -3'
miRNA:   3'- -CGCUGGaagCGGACGuGCUG-UUGUCg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.